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I was wondering how STAR development will continue with regard to the new GRCh38/hg38 assembly and the existence of ALT contigs ([Reference 1](https://www.biostars.org/p/59126/) [Reference 2](http://w…
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Getting the following error when trying to estimate `median_vaf_purity` on a combined/merged VCF file.
```python
/home/jacquelineburos/projects/cohorts/cohorts/functions.py in grab_vaf(variant)
…
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We are currently working on a retrospective oncology research project with several hospitals in Europe. In an initial phase, all the information filled in eCRFs will be saved within each hospital usin…
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**Describe the bug**
[2022-11-22 10:24:37,281] [19036] [MainThread] [ERROR] (uvicorn.error:119) - Traceback (most recent call last):
File "C:\Users\AA\AppData\Local\Programs\Python\Python39\lib\si…
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These three annotation types are related as they build on each other to make statements of higher-order reach and complexity. Here, more fundamental annotations are/can be used as input or evidence i…
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Hi.
I tired to run MoCaSeq test pipeline several times but every time FILE ERROR happend.
---- Matched BAM-files? ----
Thu Dec 23 12:34:20 UTC 2021 timestamp: 1640262860
+------------+
| FILE…
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* brainstorm use cases
* try to stand up part or all of golden demo
* hack brining together data from different sources
* hack together systems/stacks using these APIs (WES, DRS, etc)
* work on ot…
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**Describe the bug**
MONAI Label server is giving the following error when "brats_mri_segmentation_v0.2.1" is used for brain tumor segmentation.
**RuntimeError: Given groups=1, weight of size [16,…
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us_atrocities.md has been a great resource for me over the last few years, and never fails to get my blood boiling when i read over it.
Anyways, I found an interesting wikipedia article with sever…
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By chance, I have noticed the following odd behavior. Here to reproduce the issue:
```
wget ftp://ftp.ensembl.org/pub/current_fasta/homo_sapiens/dna/Homo_sapiens.GRCh38.dna.chromosome.1.fa.gz
gunzi…