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roland-rad-lab
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MoCaSeq
Analysis pipelines for cancer genome sequencing in mice.
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Error in if (cur > 0) { : the condition has length > 1 Calls: ProcessCountData -> ConvertGenomicCords Execution halted
#23
FerTalavera
opened
3 months ago
0
Error in if (nrow(peaks) > 0) { : argument is of length zero Calls: CopywriteR ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous> Execution halted
#22
FerTalavera
opened
5 months ago
0
Human pipeline reference data generation tested and fixed
#21
pcharoentong
opened
1 year ago
0
Couldn't read file MGP.v5.snp_and_indels.exclude_wild.vcf.gz
#20
mabba777
opened
1 year ago
2
Human pipeline build instructions - missing dependencies
#19
pcharoentong
opened
1 year ago
0
Container --test run resulting in errors with MultiQC/somalier
#18
dpcook
closed
1 year ago
3
Advice for running with Singularity
#17
dpcook
closed
1 year ago
11
What allelic fraction is used as a cutoff in calling mutations?
#16
nilesh-iiita
closed
1 year ago
3
CONFIG ERROR:Cannot access config file (/var/pipeline/ref/GRCm38.p6/GRCm38.bammatcher_docker.conf).
#15
geng-lee
opened
1 year ago
2
Docs for the `-rb` option
#14
soymintc
closed
1 year ago
2
CNV
#13
nilesh-iiita
closed
2 years ago
3
Manual installation and run
#12
soumyarao86
closed
2 years ago
2
Tumor only mode
#11
vincentye2
closed
2 years ago
3
SNPeff ENSEMBL 102 database construction , vep-102 installation and separate vep annotation by species to avoid human only option issues
#10
Just08
opened
2 years ago
2
download VEP release 102 instead of 96
#9
Just08
closed
2 years ago
2
Cannot access BAM file
#8
tmatsu24
opened
2 years ago
13
Delly filtered data
#7
laugon10
closed
3 years ago
13
Command fail in interactive mode WGS
#6
laugon10
closed
3 years ago
1
Human pipeline sc13
#5
sc13-bioinf
closed
3 years ago
0
MultiQC error/bug?
#4
justinkhuang
closed
2 years ago
1
Mutation Post-Processing Script Issues
#3
justinkhuang
closed
2 years ago
1
Mistake in CNV_CopywriterGetModeCorrectionFactor.R ?
#2
DavideBrex
closed
3 years ago
1
Unable to create bam files
#1
nilesh-iiita
closed
4 years ago
5