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By popular demand among our researchers: it's highly useful to see the number of reads that align to ERCC spike-ins for each raw demultiplexed bam file. It's also computationally cheap enough that it …
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I'm trying to install viral-ngs 1.4.2, downloaded from the [releases](https://github.com/broadinstitute/viral-ngs/releases) web page, following the instructions on [readthedocs](http://viral-ngs.readt…
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Hello,
After adding the requirements-test of #315, I was able to run
`
py.test -v test/unit/test_tools.py
`
However, a problem shows up: unable to install Krona.
`
[gw0] FAILED test/unit/test_tools.p…
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Hi all,
changing these two lines in mapping.py
seems to prevent an error thrown by samtools
which made IVA runs exit.
###### #################################
# old:
```
#sort_cmd = 'samtools s…
koppk updated
8 years ago
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Otherwise it picks up the system java version which may be newer and fail to run
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Dear Derrick,
Query regarding Annotation:
My metagenomics forward and reverse fastq files have 20 million reads. After removing plant similar reads from my input fastq files using (fastq_screen pipel…
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Doug
I wanted to check if you are developing code to handle metagenomic samples where there are a mixture of organisms with different translation tables?
Torsten
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