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sanger-pathogens
/
iva
de novo virus assembler of Illumina paired reads
http://sanger-pathogens.github.io/iva/
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Could not retrieve index file
#108
manisenthils
opened
1 year ago
0
runtime error
#107
antoine4ucsd
opened
1 year ago
0
iva --version does not give the correct version
#106
el-mat
opened
3 years ago
0
Dead link to sanger virtual machine on main page (https://sanger-pathogens.github.io/iva/)
#105
eccen
closed
3 years ago
1
iva --test "Error! File hiv_pcr_primers.fa" not found. Cannot continue.
#104
k39ajdM2
opened
3 years ago
3
IVA: kmc error
#103
waqasuddinkhan
opened
3 years ago
0
reduce travis builds and move to travis-ci.com
#102
puethe
closed
3 years ago
0
problem with samtools version
#101
AntonioBaeza
opened
4 years ago
0
Remove reference to support email
#100
garethpeat
closed
4 years ago
0
new docker file
#99
seretol
closed
4 years ago
0
Fix samtools version parsing so that 1.10 > 1.2
#98
mr-c
closed
3 years ago
1
Influenza segments missing
#97
migrau
opened
4 years ago
0
Report contig merges and name changes at the end.
#96
donkirkby
closed
3 years ago
1
Set smalt's random seed
#95
donkirkby
closed
3 years ago
1
Fix #93 by switching from smalt to bowtie2.
#94
donkirkby
closed
4 years ago
1
Different results on repeated runs
#93
donkirkby
closed
3 years ago
4
chimeric/misassembled contigs generated by IVA?
#92
nologo68
opened
5 years ago
0
Failed to make first seed. Cannot continue
#91
glinchan
opened
5 years ago
3
test run_gage fails
#90
rentiandong
opened
5 years ago
0
Badge
#89
puethe
closed
5 years ago
0
Added changelog
#88
ssjunnebo
closed
5 years ago
0
Update readme
#87
ssjunnebo
closed
5 years ago
0
Blank sequence causes TypeError
#86
donkirkby
opened
5 years ago
0
IVA run error
#85
nbbosa
opened
5 years ago
1
Point install instruction to webpage
#84
ssjunnebo
closed
6 years ago
0
update README and add to codecov
#83
ssjunnebo
closed
6 years ago
0
Docker instructions
#82
ssjunnebo
closed
6 years ago
0
Set up Docker
#81
ssjunnebo
closed
6 years ago
0
Excessive number of iterations
#80
buchkovm
opened
6 years ago
1
Prog versions
#79
andrewjpage
closed
6 years ago
0
iva version check of external programs fails
#78
sdwfrost
closed
6 years ago
3
kmc std::bad_alloc
#77
ChrisHIV
closed
6 years ago
10
test more samtools versions and pythons
#76
andrewjpage
closed
6 years ago
0
samtools sort command fails for samtools 1.3.1
#75
ChrisHIV
closed
6 years ago
3
iva test failing with samtools1.4
#74
rmart300
closed
6 years ago
1
update LICENSE and AUTHORS
#73
ssjunnebo
closed
7 years ago
0
IVA sensitivity threshold
#72
antoine4ucsd
closed
7 years ago
2
multithreading smalt error
#71
lmoncla
closed
7 years ago
8
Embl no cds fix
#70
martinghunt
closed
7 years ago
0
upstreaming some patches
#69
satta
closed
7 years ago
0
Pysam 0.9.1.x
#68
martinghunt
closed
7 years ago
0
Flag reference opt as experimental
#67
martinghunt
closed
8 years ago
0
Add travis files
#66
martinghunt
closed
8 years ago
0
Version bump 1.0.5
#65
martinghunt
closed
8 years ago
0
fix spelling
#64
satta
closed
8 years ago
0
Tests fail with KMC 2.3 from Homebrew on OS X
#63
satta
opened
8 years ago
4
add copyright notices
#62
satta
closed
8 years ago
0
make IVA compatible with new 'samtools sort' syntax
#61
satta
closed
8 years ago
0
add copyright notices
#60
satta
closed
8 years ago
0
samtools errors caused by mapping.py
#59
koppk
closed
8 years ago
4
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