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PR #57915 may have induced a performance regression. If it was a necessary behavior change, this may have been expected and everything is okay.
Please check the links below. If any ASVs are parameter…
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Hi Dominik!
Thanks for quickly updating BOLDigger to support BOLD V5!
I've noticed that now there seem to be a lot of "no matches" and when checking the hits there's no hits below 94% similarity…
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I have recently read your paper very useful paper in Microbiome about identification of contaminants in metagenome sequence data.
I would be very grateful if you could clarify for me what the diff…
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Hi Chi,
This may be a naive question and tried a couple of things. We are trying to subset the microtable after querying the FungalTraits database to a specific lifestyle: "plant_pathogens". But …
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Hello,
I need to identify the top 10 most abundant Genus for the Asthma Samples and the Control Samples that I have.
I have the following phyloseq object:
phyloseq-class experiment-level object…
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As of DADA2 1.12 there's a pool parameter to the dada() function that can improve denoising of rare ASVs. We should support that.
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## Issue
### **What is the issue?**
When I type "denial of service" in the search field on opencre.org I cannot find a reference to the OWASP Denial of Service cheat sheet - https://cheatsheetse…
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Hi,
I would have a question regarding the use of tax_glom and rarefy_even_depth in phyloseq.
For my study, after having merged the tree, the metadata, the OTU table and taxonomy, I first used tax_…
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Hi Grunwaldlab,
Thanks for the amazing package. It's _beautiful_.
Quick question (has come up before here, but no appropriate solutions found as far as I can tell):
I'm running an analysis on a p…
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Hello .. could you please help me why I am getting this error (screenshot attached below)?
I used three files (attached in .zip; all in .tsv)
1- ASVs count table (I don't have an OTU table, not su…