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Hi,
I'm new to metaphlan, and trying to run the tutorial. But there was a problem with the first step.
Code: metaphlan SRS014476-Supragingival_plaque.fasta.gz --input_type fasta -o SRS014476-Supragi…
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@Fienne found a broken link in the user guide. That reminded me of two tools that can be used for finding issues like this. The second can also be used to prevent, by hooking it up in our CI system.
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The following is a list of tools that are missing or are not easy to map. A few of them are high-profile tools.
xref: https://github.com/galaxyproject/tools-iuc/pull/3411/files
annotatemyids
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Hi,
I'm trying to get the Jupyter Notebook set up on a windows10 computer. I start in Git Bash, and am able to download the repository using git clone https://github.com/caporaso-lab/tax-credit an…
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Hello!
I have been using ST2 to calculate sources for each of my sink samples and it's been great. However, I wanted to access the output of each feature's contribution with the --per_sink_feature…
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Given that we have begun encountering pathological cases in which we cannot parse OTU [maps](https://github.com/qiime/qiime/issues/594), I think its time we revisit them. How does the following struct…
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Cutting and pasting names for samples in the Phinch Name column in the Filter Data page can result in unusable names.
I recommend stripping HTML elements and checking for valid Unicode.
![html_elemen…
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Identify processing bottlenecks that will be desirable/possible to tackle for the 1.9.0 release date (i.e., parts of QIIME that can be optimized for better performance). Post ideas here so that we can…
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Dear all, thanks for your fantastic work. How can we calculate the beta diversity of unweighted_unifrac, weighted_unifrac from your pipeline?
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There are some QIIME scripts (see list below) that print the results through stdoud and do not generate any output file. In order to be able to integrate these scripts on Galaxy, an optional logfile w…