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https://mp.weixin.qq.com/s/9DjEipFIFKZspx7zlwTM3w
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https://mp.weixin.qq.com/s/9DjEipFIFKZspx7zlwTM3w
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Proof of concept for relative expression calculation in execution workflows
**POC content**
In this issue, we discussed the following:
- Decided which potential tools to calculate relative expr…
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@SamBryce-Smith's POC and comments: https://docs.google.com/document/d/1t30SEHZ6RSFYXG7o1ylWCfgYWVbZCA1jj-SkES1M2rw/edit?usp=sharing
Sam edit: previous issue/discussion #278
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Dear authors,
I want to calculate the spliced/unspliced gene ratio but I am not sure what to do with the ambiguous count table. Should I just remove it or combine it to one of the spliced or unspli…
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Hi there,
Thank you so much for this amazing tool!
I am just wondering if it is possible to get a more in-depth explanation of each parameter for the config file e.g. for isoform parameters?
…
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Hello,
At UMCCR, we use arriba as a fusion caller for WTS clinical samples for cancer patients. Arriba is part of our WTS production pipeline setup and works great.
We have recently encountered …
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/marianaferreira/betAS
Confirm the following by ed…
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Hi there,
So I'm trying to look at novel/unannotated isoforms detected and quantified by Bambu and I'd just like some clarification and/or advice. So basically I get an extended annotation GTF fil…