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LuyiTian
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FLAMES
Full-length transcriptome splicing and mutation analysis
GNU General Public License v3.0
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Example not working for single cell pipeline
#53
dominguezjorge
opened
2 weeks ago
0
Facing error with minimap2 when running single cell long pipeline.py
#52
Aravind-sunda
opened
2 months ago
0
Fix #50
#51
maxim-h
closed
3 months ago
0
Compilation issue for match_cell_barcode
#50
maxim-h
closed
3 months ago
0
versions for conda dependencies
#49
nick-youngblut
opened
3 months ago
2
Transcript information
#48
hyeon9
opened
6 months ago
0
Gene name instead of gene_ID
#47
rania-o
opened
6 months ago
0
transcript id name
#46
Qirongmao97
opened
7 months ago
0
bam_mutations.py
#45
choudharis2
opened
8 months ago
0
error in transcript quantification step
#44
sparthib
opened
9 months ago
0
Error during re-alignment
#43
sparthib
closed
9 months ago
1
Run FLAMES directly from an aligned bam file.
#42
PT806
opened
1 year ago
0
How to use multiple cores
#41
lingminhao
opened
1 year ago
0
Missing mitochondrial transcripts in isoform_annotated.gff3
#40
koehlek99
opened
1 year ago
0
Adapt match_cell_barcode to custom Barcode and UMI Length
#39
stambolliualen
opened
1 year ago
0
match_cell_barcode - output cell barcode statistics file
#38
maegsul
closed
1 year ago
2
sc_long_pipeline.py--> ValueError: invalid contig `chr1`
#37
jeneaadams
opened
1 year ago
10
No output from match_cell_barcode
#36
LI-Yan-Ming
closed
1 year ago
1
Flanking sequence match
#35
lingminhao
opened
1 year ago
3
How to know how many reads are assigned to the barcode ?
#34
lingminhao
closed
1 year ago
0
Source compilation errror
#33
lingminhao
closed
1 year ago
1
UMI deduplication in pipeline output?
#32
michael-nakai
closed
1 year ago
2
Typo in parse_realigned_bam?
#31
ChangqingW
closed
1 year ago
0
Typo in parse_realigned_bam?
#30
ChangqingW
closed
1 year ago
0
Isoform parameters
#29
jchang97
closed
1 year ago
2
FSM and FSM-match to ref
#28
parsboy66
opened
2 years ago
0
Reproducability changes for python
#27
OliverVoogd
closed
2 years ago
0
Applying FLAMES to PacBIO
#26
apc1992
closed
1 year ago
0
empty transcript_assembly.fa file using example SIRV data
#25
luiseze
closed
2 years ago
1
Update FLAMES to python3 for reproducible outputs
#24
ChangqingW
closed
2 years ago
1
Config file parameters
#23
hacaoe
opened
2 years ago
1
fsm_splice_comp.csv
#22
haowBio
closed
2 years ago
0
Using transcript_count.csv.gz matrix with popular analysis tools
#21
rakszewska
opened
2 years ago
1
Update binary file; add description for match_cell_barcode; Update get_gene_flat
#20
ChangqingW
closed
2 years ago
0
Cluster annotation file
#19
jchang97
closed
2 years ago
3
What's the difference
#18
haowBio
opened
2 years ago
1
fix transcript_to_exon being modified by get_gene_flat()
#17
ChangqingW
closed
2 years ago
0
match_cell_barcode qnames too long
#16
danledinh
opened
2 years ago
2
Compute resource allocation?
#15
danledinh
opened
2 years ago
2
single cell full length RNA-seq mutation detection
#14
garfield-hu
opened
2 years ago
0
minimap error using sc_long_pipeline.py
#13
aheravi
opened
3 years ago
1
run match_cell_barcode, no error, no result, match_cell_barcode /data_RAGE_seq/data1 cell_barcode_stat.txt split_barcode.fastq flame_3M-february-2018.txt 2; split_barcode.fastq is zero,no other file generation。
#12
markme123
opened
3 years ago
7
where is your whiltelist
#11
markme123
opened
3 years ago
1
Demultiplexing issues
#10
yangao07
opened
4 years ago
3
GTF format error?
#9
danledinh
closed
3 years ago
1
FLAMES vs FLAIR
#8
danledinh
closed
3 years ago
1
config file
#7
aheravi
opened
4 years ago
3
Demultiplexing
#6
callumparr
opened
4 years ago
12
Added example data and updated README
#5
Shians
closed
4 years ago
0
Added FLAMES logo
#4
Shians
closed
4 years ago
0
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