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:exclamation: Make to check out our [User Guide](https://github.com/soedinglab/hh-suite/wiki).
## Expected Behavior
hhr file should have same output to a3m file.
## Current Behavior
When type th…
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I tried to run AlphaFold latest version on a new machine with **GPU RTX4090, CUDA version 11.8 (downgraded from 12.2), Ubuntu 22.04 LTS.** I used anaconda3 to build the alphafold environment. However,…
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I am running into "could not find CIFs" error when running `run_from_fasta.py` file and please find the command below.
Attached is the screenshot for the same
Command I am running:
`python …
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## Expected Behavior
I am trying to build a custom database from my own fasta file by (1) clustering all protein sequences using `mmseqs` and then (2) following the steps of [https://github.com/soedi…
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Hi,
Is anyone working on these below workflows?
* [Just Annotate My Genome (JAMg)](http://jamg.sourceforge.net/)
* [Just_Annotate_My_proteins (JAMp)](http://jamps.sourceforge.net)
Some of the st…
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After complete installation according to instructions and testing the example, I have the following error
Running on GPU
plddt best
/home/xxxx/miniconda3_4.6.14/envs/RF2NA/lib/python3…
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Hi,
I'm running alphafold 2.3.2 through singularity
```
/usr/bin/time run_alphafold_singularity.py --fasta-paths protein.fasta --output-dir ./norelax_2.3.2 --cpus=$SLURM_CPUS_PER_TASK --gpu-devices…
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Dear all
Our server has a following architecture. We currently have the same head and compute node. It seems to be ok submitting SLURM jobs as single nodes, but we are currently struggling to set u…
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I am trying to use openfold on a machine with an rtx 4090 with cuda driver 12.1
I install the package using the environment file and I get this problem at the time of installing attn_cuda
(copying…
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I'm trying to make a global profile-profile alignment of two MSAs in FASTA format using hhalign (hhsuite-3.3.0-SSE2-Linux), i.e. preserving the columns within each MSA and aligning pairs of columns to…