-
Hi,
I tried to upload Analayze 75 files to usegalaxy.org and I got the following error message:
```
Fatal error: Exit code 1 ()
Traceback (most recent call last):
File "/cvmfs/main.galaxy…
-
Hi Melanie!
First of all, let me congrats you for this job. It's no easy to pack a MSI analysis like you are doing with Galaxy/Docker... You are really making the analysis very accesible to unexperie…
-
It seems the [GUI version](https://www.cs.bham.ac.uk/~ibs/imzMLConverter/) does not use quite the same code as what is available in this repository.
I convert mzML produced by msconvert. The GUI v…
-
I tried to read the imzML from a instrument called "MALDI/ESI Injector (Spectroglyph) coupled to Thermo's Orbitrap Q Exactive Plus." Parsing crashes without any error message. To avoid memory problem…
Kawue updated
5 years ago
-
From internal bug list:
```
> Attempt to upload GTF from pseudomonas.com (genome resource) failed with
> the error above. Not sure how to proceed:
> Fatal error: Exit code 1 ()
> Traceback (mos…
-
Hello,
I used your ms_peak_picker repo to pick some peaks on my metabolite data sets. The data origins from either MALDI-TOF or MALDI-Orbitrap instruments and is converted from imzML to HDF5 to a sim…
Kawue updated
5 years ago
-
Go to compostie data upload, choose imzml and insert those two files:
```
https://zenodo.org/record/1560646/files/mouse_kidney_cut.imzML
https://zenodo.org/record/1560646/files/mouse_kidney_cut.i…
-
```python
./python3.4/site-packages/mzml2isa/utils.py:274: UserWarning: Could not use latest online IMS ontology, using local (version ['0.9.1'])
"using local (version {})".format(obo.meta['versio…
khaug updated
6 years ago
-
## Overview
Since the current build can take up to more than an hour, it would be preferable to have more fine-grained tests to use with mzml2isa. While we want to ensure compatibility with MetaboLig…
-
Hey,
I am trying to use the “alignSpectra” function for m/z calibration of mass spectrometry imaging data. The data are either read in as imzML files or directly constructed from the mass spectra by…