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A reminder to look into moving tools I'm not actively working on to another well-established tool repo.
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Currently `docs/_writing_parameters.rst` uses this as a boolean parameter example:
```
-V shift quality by '(-Q) - 33'
```
This seems inappropriate and rather than exposing it as a user setti…
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After installing JBrowse 1.16.5+galaxy3 I get the following error when trying to execute JBrowse. Installation was using conda to satisfy dependencies.
```
Fatal error: Exit code 1 ()
ListUtil.c:…
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The steps involved for DM are:
Finding out where `EUKulele download --database phylodb` installs the DB; copy the data from there to the location Galaxy needs (example: https://github.com/galaxypro…
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Seen on EU running 23.0, neither org nor (dev) AU experience the issue
The advanced search for the ['name=circos'](https://usegalaxy.eu/tools/list?name=circos) returns all of the tools in the circo…
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1. Goto http://planemo.readthedocs.io/en/latest/standards/docs/best_practices.html
2. Click the link "Edit on GitHub"
3. Goes to https://github.com/galaxyproject/planemo/blob/master/docs/standards/d…
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Could you guys spec it out a little bit more? What do you expect of it and how it should behave. @bgruening @nsoranzo @erasche
xref: https://github.com/galaxyproject/tools-iuc/pull/249
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test history https://usegalaxy.org/u/jen-galaxyproject/h/circos-nature-workflow
tool_id=toolshed.g2.bx.psu.edu/repos/iuc/circos/circos/0.69.8+galaxy12
test case https://training.galaxyproject.org/tr…
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- [ ] Certain parameters types require default values, these should be validated.
- [ ] Check test data files exist.
- [ ] Check tests test something (`raise Exception( "Test output defines nothing …
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