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legacytes_MATRIX: Results summarized at the locus level for uniquely mapped reads, and at the subfamily level for multi-mapped reads. This was the default output until v1.08, and the one used in the p…
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### Is your feature related to a problem?
In one of my samples, wf-single-cell fails to correctly find the cutoff in the knee plot and returns an excessive large number of cells. Consequently, when l…
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## What feature would you like to see?
Data Matrix code should be recognised similar to QR Code and not only recognised while centering the barcode.
## How would you use it?
Similiar to t…
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Hi,
Thanks for developing MATES for TE quantification. I am running mates on one sample from scRNA seq.
The BAM file looks like:
```
`SRR21834807.87030294 16 chr1 97753 0 90M * 0 0 CAGTAAACT…
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Hello! I am using RCAv2, I follow the tutorial here: https://github.com/prabhakarlab/RCAv2. I received the error: "Error in t.default(raw.data) : argument is not a matrix" when I run this code: PBMCs
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When creating a correlation matrix plot using the scatterPlotMatrix function, NA values in the dataset are being plotted as zero instead of being ignored. This discrepancy is observed when comparing t…
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Hey, I am working on EPICv2 data. ChAMP ("2.30.0"), ChAMPdata ("2.34.0").
**Error:**
> Meth Matrix and UnMeth Matrix seems not paried correctly.
With: `champ.load(directory = dir_idats, arrayty…
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PR #3125 implemented #2613 to enable to `fwrite` to accept `matrix`. This was merged in v1.12.0. However it converts matrix to data.table which can be costly.
The convert can be avoided as follows.
…
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Output of `node-red-dev validate`:
```
› Warning: D03 got is not at latest version, package.json specifies: ^12.0.2, latest is: 14.4.2
› Warning: D03 matrix-js-sdk is not at latest version,…
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Currently the scatterplot has severe problems as described in https://github.com/datavisyn/visyn_core/issues/470
Step 1 is to collect a list of requirements for the scatter plot that we want to sup…