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YuanTian1991
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ChAMP
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Beta valued excel file
#52
TahirahYasmin
opened
5 days ago
0
Request for support of new Illumina 270K methylation chip
#51
shenzhongjun
opened
1 month ago
0
GSEA analysis with ChAMP
#50
yiyi1247
opened
1 month ago
0
Error in pd file
#49
amiesb
closed
1 month ago
0
champ.DMP output with significant positions, but output has zero lines
#48
biofuture
opened
2 months ago
0
EPICv2 still not working?
#47
justinejacobi
opened
4 months ago
0
Different result from champ.filter() function with the same dataset
#46
thscandolara
opened
5 months ago
0
Error in Champ.DMP()
#45
debangana234
opened
6 months ago
0
关于导入probe.features.epicv1
#44
shenzhongjun
opened
6 months ago
1
Bug: In champ.import (ChAMP "2.30.0")
#43
MitaliKatoch
opened
8 months ago
2
ChAMP data and EPIC v2 arrays
#42
keenhl
opened
9 months ago
1
Apply combat and refbase on EPIC v2 data
#41
keenhl
opened
9 months ago
0
champ.filter Filtering probes on EPICv1
#40
robinjugas
opened
9 months ago
1
Check of class of beta matrix in champ.SVD returns error since R 4.0.0
#39
sarah-voisin
opened
1 year ago
0
myNorn is called beta in champ.SVD
#38
berrera
opened
1 year ago
0
EPICv2 chip not supported
#37
shenzhongjun
opened
1 year ago
7
Error with champ.CNA processing
#36
thscandolara
opened
1 year ago
0
Fix bug in filter function when autoimpute is FALSE
#35
YuanTian1991
opened
1 year ago
0
Replace EstDimRMT with EstDimRMTv2 across all function
#34
YuanTian1991
opened
1 year ago
0
Bad error handling when no diff results reported
#33
ShixiangWang
opened
1 year ago
0
Debugging champ.norm
#32
iskandari
opened
1 year ago
1
Update champ.SVD.R to work with R >= 4.0
#31
voudiou
opened
1 year ago
0
Add gene change direction for ebGSEA genes
#30
YuanTian1991
opened
1 year ago
0
Bug Report on champ.DMR
#29
HuangRuocheng
opened
2 years ago
0
champ.EpiMod function not found
#28
drhmoosavi
opened
2 years ago
3
Information for champ.GSEA()
#27
shwetagodbole
opened
2 years ago
0
Error in DMP when one sample group doesn't have a replicate
#26
Jojo6297
opened
2 years ago
0
champ.DMR different results which are not expected
#25
lorbaer
opened
2 years ago
0
champ.reffree removed?
#24
danphillips28
opened
2 years ago
0
apply combat and refbase
#23
SofyaMa
opened
2 years ago
3
Attempt to set 'rownames' on an object with no dimensions issues in `champ.DMR`and `champ.SVD`
#22
Shicheng-Guo
opened
2 years ago
2
Avoid error from rowMeans() if there is only one DMP
#21
mcol
opened
2 years ago
1
Use longer form of logical operators (&& and ||) in if statements.
#20
mcol
opened
2 years ago
0
champ.Block, arguments must have same length, but they do
#19
bhanratt
opened
3 years ago
7
Error using DMRcate function
#18
aciolfi
opened
3 years ago
7
champ.norm error
#17
Morph0124
opened
3 years ago
0
DMP.GUI() error
#16
mdozmorov
opened
4 years ago
1
Run champ.QC(), but it does not show different color for different sample group in dendrogram plot.
#15
lovelymaoqin
opened
4 years ago
0
Use correct manifest file query
#14
prasundutta87
opened
4 years ago
0
champ.DMR() error ..... "cannot allocate vector of size 56.5 Mb"
#13
ronfinn
opened
4 years ago
3
ChAMP : myNorm <- champ.norm()
#12
JulieC42
opened
4 years ago
3
champ.SVD()
#11
alliekarz
opened
4 years ago
0
champ.QC() cmdscale()
#10
alliekarz
closed
4 years ago
0
How to draw DMP-Gene plot without DMP.GUI?
#9
DongqiangZeng0808
opened
4 years ago
0
Added compatibility with logical pheno variables
#8
lardenoije
opened
4 years ago
0
k parameter not passed on to impute.knn
#7
lardenoije
opened
4 years ago
0
Different models used in DMP vs. DMRcate
#6
kdillmcfarland
opened
4 years ago
0
Added Manhattan and Q-Q plot to champ.DMP
#5
rrydbirk
opened
5 years ago
2
Added scree plot to champ.SVD()
#4
rrydbirk
closed
5 years ago
4
Is it possible to modify the default reference genome version?
#3
yanglq-bio
opened
5 years ago
1
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