-
I am working with Nanopore 16S metabarcoding data and did not produce FASTAs of the 16S sequences when getting the relative abundances, the pipeline went from read to an OTU table. There are about 45 …
-
Hi, I am looking at some data from the 2 x 150 bp V4 region, and when I look at the quality plot, we see a drop in the middle of the read for both forward and reverse. Furthermore, we see that many of…
-
Subscribe to this issue to receive updates about Brewsci/bio.
-
For a given repository, GitHub can parse and expose a recommended way to cite the repository. It only requires a `CITATION.cff` file. Check for instance:
https://github.com/frederic-mahe/mumu/blob/…
-
When uploaded 12S eDNA metabarcoding data the fish Class Actinopterygii gets excluded from the metrics, and is replaced by unknown Class.
![image](https://github.com/gbif/edna-tool-ui/assets/152626…
-
Hi all,
I keep receiving this error message "Error: node stack overflow" after the dereliction step.
I've included these few steps after the filter and trim as I had few samples that had 0 read…
-
This submission is stuck in 'Processing' please set to 'Submitted' status.
[Data from: Direct synthesis, characterization, in vitro and in silico studies of simple chalcones as potential antimicro…
-
This based on the discussion at https://forum.qiime2.org/t/how-to-import-a-biom-file-containing-sequences/29452/7 where filing an issue was suggested, along side background reading including https://f…
-
Dear all,
I'm working on a metagenomics / metabarcoding project of soil samples. It involves Illumina MiSeq paired end sequences with 300 bp and 16S primers. I'm following DADA2 pipeline, however, …
-
It would be cool if we could breakdown the MBON datasets by collection methods (eDNA, SCUBA, Passive Acoustic, Animal Tracking, etc..)
I think we would need to parse abstracts from t…