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**Submitting author:** @achennu (Arjun Chennu)
**Repository:** https://github.com/achennu/microbenthos
**Version:** v0.8.2
**Editor:** @lheagy
**Reviewers:** @leouieda
**Author instructions**
Thank…
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I'm trying to install RDPTools on a linux system (RHEL 7.3). When I run:
```
sudo git submodule init
sudo git submodule update
sudo make
```
I get an error:
```
ant -f Clustering/build.xml jar…
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It'd be great to have a survey of metadata standards for the user that is using our package and is new to metadata.
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## @jhollist review notes
These are my review notes for the JOSE submission at .
### General Comments
This submission introduces a series of tutorials for introducing and practicing tools for…
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Hey all. I'm a little new to the bioinformatics/microbial ecology scene and its all so fascinating. I've just come from the DADA2 portion and have been using phyloseq to analyze my data. Unfortunately…
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**Submitting author:** @pschloss (Patrick D Schloss)
**Repository:** https://github.com/riffomonas/reproducible_research
**Version:** v1.0.0
**Editor:** @tracykteal
**Reviewer:** @jhollist
**Archive:…
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L64 -- reference for bacteria using env DNA
L60 -- ref for smaller animals have spores(?)
L122
L296 -- to Methods? Is it not mentioned there?
L337 - why the "Fig3" in the text?? it .. isn't
Res…
aammd updated
6 years ago
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Hello,
I am trying to run checkm merge on some data but it returns an empty merger.tsv file, while all the other output files look normal. The bins I'm trying to merge as supposed to belong to the …
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The Jensen-Shannon Distance (square root of the Jensen-Shannon Divergence) is a true metric distance with good statistical properties and biological interpretation. I was introduced to it by Mani Arum…
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From David's email, some of which to be implemented:
>I did find a nice summary of alpha/beta diversity metrics that are important to biologists (imported from the 16S realm):
https://www.drive5.c…