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**Submitting author:** @david-barnett (David Barnett)
**Repository:** https://github.com/david-barnett/microViz
**Version:** v0.7.9
**Editor:** @lpantano
**Reviewers:** @marypiper, @yoonjeongcha
*…
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Dear Francisco,
Recently, I have tried to use your pipeline to analyse some metagenome data. For the bin, i found I can only get about 30 MAGs of high quality (completeness > 90% by checkM). So I am …
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All the terms listed below have been approved for inclusion in the new "Food" package to be included in v6. I am adding this list here to enable a history of the new terms to be included in the repo a…
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Hi,
if we first agglomerate data in a tse object to e.g. Phylum level and then try to convert to pseq, we get an error `Error in validObject(.Object): invalid class "phyloseq" object:
Component t…
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1. What is the topic of your lesson or lesson proposal?
Analysis of data related to microbial communities from diverse environments. Specifically, this lesson will focus on analysis of "amplicon" d…
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We have included a mock community sample in our analysis.
This mock comprises 8 species.
Dada produces 273 ASVs for this sample.
When we cluster the ASV sequences with decipher they form 8 well def…
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Do you have any additional datasets you like to add/(have added) to `microbiomeDataSets`?
@antagomir @dombraccia @microsud @fionarhuang
Anything against submitting the datasets first after some…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/MPiet11/BiodivoTools
Confirm the following by edi…
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I am wondering what would be the recommended coverage of illumina paired-end short read to use for correction. In my case I have ~270x short read coverage of the genome I am intending to assemble de n…
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How do we begin annotating the microbial taxonomy with morphological and physiological properties? For example:
* [obligate aerobes](https://en.wikipedia.org/wiki/Obligate_aerobe)
* [facultative ana…