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anemia - is going to a phenotype hierarchy in EFO
anemia (disease) - is going to a disease hierarchy in EFO
The cross-mappings are matching and it's a little confusing having the same condition as…
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The term behavior process needs to be placed under process.
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Mondo has a number of annotation and object properties with hash IRIs that don't resolve. These kinds of IDs can't be compacted using the `MONDO` CURIE prefix and lead to confusion. I guess there may …
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Related to #1382, we need to cover scenarios originally mentioned #1317. We also need behave tests for each of them.
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We are going to start doing some work in our group comparing transcriptome samples across a number of species. It looks like the upheno ontology is exactly what we are looking for! The 6 species we ar…
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As a general rule, if a drug is available in Chebi, the corresponding 'response to' term should be created in GO and imported into EFO. Review all subclasses of response to drug that currently have an…
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I think this is a bug, if not please explain the design decision. For some OMIM disease entries, e.g. https://omim.org/entry/613659, in the omim.ttl file there is only 1 disease to gene association ('…
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I see from https://github.com/monarch-initiative/mondo/issues/1756 that the decision was to treat MONDO:0013517 'beta-thalassemia HBB/LCRB' equivalent to SCDO:0000251 [Clinical Phenotype of Beta Thala…
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This ticket is for starting documentation to allow external collaborators to ingest their data sources. This ticket was inspired by Xenbase contacting us requesting help with documentation for the co…
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I have been calculating the phenotypic similarity of HP lists using the obo file (http://purl.obolibrary.org/obo/hp.obo).
Now, my goal is to calculate the semantic similarity of lists of HP and MP …