-
Dear Raviteja Vangara,
I am currently using SigProfilerAssignment for signature analysis. But I found I could not reproduce the results shown in the supplementary files by Alexandrov, L.B., Kim, J.…
-
Tagging @jharenza @jashapiro @jaclyn-taroni for discussion.
With V22, we now have different numbers of samples across certain cancer groups. The purpose of this issue is to discuss a unified strate…
-
Hello,
I would like to analyse mutational signatures across covid lineages with the pipeline (https://bioconductor.org/packages/release/bioc/vignettes/MutationalPatterns/inst/doc/Introduction_to_Mu…
-
- https://www.nature.com/articles/s41598-021-04207-6
> We assessed [1](https://www.nature.com/articles/s41598-021-04207-6#Fig1)8 methods for extracting mutational signatures on [2](https://www.natu…
-
Hello I am running SigProfilerExtractor command and the only signatures that are received as output are the CH6 and CH18.
It does not bring any signature for any number of samples.
Can you please …
-
Congratulations on the new CNV signature paper! https://www.nature.com/articles/s41586-022-04738-6
I would like to extract CNV signatures (decompose to the published CNV signatures to get insights …
-
Hello,
I've downloaded 8000+ TCGA samples to analyze the mutational signatures. I converted the maf files to ICGC simple somatic mutation format as one file:
Project Sample ID Genome mut_…
-
Plots from the `mutational-signatures` module continue to be made within the module rather than from scripts in `figures/scripts`. At this stage of the project, since we are revisiting these figures _…
-
Hi,I read the CNV signature paper(s41586-022-04738-6),
I understand that computing CNV signature requires SigProfilerMatrixGenerator-->SigProfilerExtractor-->SigProfilerSingleSample. I do…
-
微博内容精选