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### Description of the bug
Hi,
I ran the pipeline (`3.1.2`) for a bunch of tumor-only WGS samples. CNVkit reference bed files have both target and antitarget with improper bin counts:
```
wc -l *.…
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VIPER provided index information for
```
mkdir VIPER_static/mm10/assembly/
```
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Briefly comment on the issue why you would be interested in this project.
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Dear Thierry,
**Description of the bug**
assigner::assignment_ngs does not work with the dataset _data_assigner_sim_01_ included in assigner - suspecting it is a dplyr issue. I tried dplyr v1.0…
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Hello,I meet a question when I run AA for getting data.
The AmpliconArchitect version is 1.2
my command:
python /home/tang/tools/AmpliconArchitect/src/AmpliconArchitect.py --bed ../NCI-H716_…
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When I run filter_input.py, I get the the following KeyError:
Metagenome1 (error surfaced relatively quickly):
Indentifying 16S reads
Traceback (most recent call last):
File "/Users/spaver/bin/reago…
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Dear GATK developers,
Thank you very much for the tool! I recently encountered an issue while running GATK gCNV, specifically with the step GermlineCNVCaller in cohort mode. I ran the workflow usin…
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There are a number of packages used by bcbio that depend on log4j, including fgbio, hmftools, gridss, picard, break-point-inspector, gatk, bcbio-variation.
Since these tools are not connected to we…
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affy_probeset:
label: Affymetrix probeset
catalog: FIXME
category: Probe
prefix: 'http://identifiers.org/affy.probeset/'
AffymetrixのマイクロアレイIDなので、NBDCデータベースカタログにエントリを作るのは適切ではない?
該当なしの場合…
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```
What steps will reproduce the problem?
1.Making the input format file (custom java script)that takes my vcf file, and
a file with the samples IDs and its corresponding populations and make the
…