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利用tcga数据创建白名单列表，仅考虑至少在2个cancer type至少出现2次的focal扩增基因。
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Hi,
I use the following command to build the mus_musculus database: fusioncatcher-build -g mus_musculus -o databases/mm39.
After I finished the building processes, I check the file "version.txt". A…
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#### What analysis module should be updated and why?
After [v11 data](https://github.com/PediatricOpenTargets/ticket-tracker/issues/239) is released, `fusion-frequencies` module needs to be upd…
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I believe there is a slight problem in the way that the `check_input` function performs check 3 using the `check_gene_names` function. Currently, the `check_gene_names` function searches all features …
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Gupta, Shantanu, and Ronaldo F. Hashimoto. "Dynamical Analysis of a Boolean Network Model of the Oncogene Role of lncRNA ANRIL and lncRNA UFC1 in Non-Small Cell Lung Cancer." Biomolecules 12.3 (2022):…
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@tugHall
I met the following error in the latest tugHall. Could you please tell me how to fix?
```
Model definition:
Compaction_factor = TRUE
model_name = proportional_metastatic
Pa…
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#### What data file(s) does this issue pertain to?
dgd fusion file
#### What release are you using?
v12
#### Put your question or report your issue here.
We will need to harmonize this …
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#### What analysis module should be updated and why?
We would like to determine what the differences are between using MantaSV and GATK CNV in the CNV consensus module. @sickler-alex has created …
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Hi,
I have a problem that is somewhat similar to the ones reported in issue #157 and #115
We run fusioncatcher on a large cohort (> 600 samples) with RNAseq data from leukemic bone marrow.
In so…
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We've discussed various ideas for using PFOCR to do prioritization and/or clustering of trapi results. Based on our 9am meeting today, we decided to create a new issue for this and to use the followin…