-
An unexpected error has occurred.
Please consider posting the following information to the
conda GitHub issue tracker at:
```
https://github.com/conda/conda/issues
```
Current conda install:
```
…
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**Version info**
- bcbio version (`bcbio_nextgen.py --version`): 1.2.9a
- OS name and version (`lsb_release -ds`): CentOS Linux release 7.8.2003 (Core)
**To Reproduce**
Exact bcbio command you h…
jxshi updated
2 years ago
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Greetings,
I am encountering issues similar to that raised in issue 741, but it doesn't seem to be due to memory issues
https://github.com/bcbio/bcbio-nextgen/issues/741
The job scheduler is SL…
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Installing via bcbio results in error "package libtiff-4.3.0-hf544144_1 requires libdeflate >=1.7,
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# Command submitted to cromwell server (v52)
```
curl -X POST --header "Accept: application/json" -v "localhost:8000/api/workflows/v1" -F "workflowSource=@gridss-purple.packed.json" -F "workflowIn…
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This is a list of all module tests that we need to get the tests passing for again: Please assign yourself by editing this issue:
- [x] bowtie2/align (assigned @JoseEspinosa )
- [x] bowtie2/build_…
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Hello,
I realise this is not an "issue" per se, but could any of you guide me in the steps necessary for running optitype on mouse RNASeq data ?
I realise I would at least need to compile a fasta …
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Python 3.7.4 version is available but the user requesting Ptyhon 2 support.
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Would you be willing to please create a build of OptiType that works with GCCcore-8.3.0? The currently available module (OptiType/1.3.2-foss-2018b-Python-2.7.15) appears to require GCCcore-7.3.0. Howe…
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This will require making modules for the steps we need in the pipeline:
- [x] BWA Mem
- [ ] Yara
- [x] Samtools
- [x] OptiType
- [x] MultiQC
Parts of this already handled upstream in nf-cor…