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chapmanb
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cloudbiolinux
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
http://cloudbiolinux.org
MIT License
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160
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cloubiolinux.org website is hijacked or domain expired
#415
M-Try
opened
2 months ago
0
Bump paramiko from 2.10.1 to 3.4.0 in /deploy
#414
dependabot[bot]
opened
7 months ago
0
Update miRBase download URLs
#413
rchekaluk
closed
7 months ago
0
Bump GRCh37 dbnsp to build 156
#412
rchekaluk
closed
8 months ago
0
Update dbsnp.yaml
#411
kokyriakidis
closed
7 months ago
2
Update packages-conda.yaml
#410
naumenko-sa
closed
1 year ago
0
Update packages-conda.yaml
#409
naumenko-sa
closed
1 year ago
0
Update packages-conda.yaml
#408
naumenko-sa
closed
1 year ago
0
Update dbsnp.yaml
#407
naumenko-sa
closed
1 year ago
0
Update dbsnp.yaml
#406
naumenko-sa
closed
1 year ago
0
Update dbsnp.yaml
#405
naumenko-sa
closed
1 year ago
0
Update r-bcbiornaseq to 0.5.1
#404
mjsteinbaugh
closed
1 year ago
1
Attempt to update r-bcbiornaseq environment pinning
#403
mjsteinbaugh
closed
1 year ago
0
Update mirbase.yaml
#402
amizeranschi
closed
1 year ago
0
Fix python2 link2
#401
naumenko-sa
closed
2 years ago
0
gnomad moved to the gcloud. fixed hg38 recipes
#400
naumenko-sa
closed
2 years ago
1
Bump paramiko from 2.0.9 to 2.10.1 in /deploy
#399
dependabot[bot]
closed
2 years ago
0
Update GRCh37 dbnsfp
#398
matthdsm
closed
1 year ago
1
Update dbnsfp.yaml
#397
matthdsm
closed
1 year ago
1
Update ncbidir of hg38-noalt. Fixes broken link.
#396
kokyriakidis
closed
2 years ago
0
update canonical cancer transcripts id to match snpeff5.0
#395
naumenko-sa
closed
2 years ago
0
fix2 for not linking samtools from python3.6
#394
naumenko-sa
closed
2 years ago
0
dont link samtools in bin - use anaconda/bin samtools
#393
naumenko-sa
closed
2 years ago
0
Please submit cloudbiolinux/BCBIO related issues to bcbio github
#392
naumenko-sa
opened
2 years ago
0
Fix mirbase URLs
#391
rollf
closed
2 years ago
1
update hg19 mirbase
#390
naumenko-sa
closed
2 years ago
0
pin rhdf5 and ipython pins
#389
naumenko-sa
closed
2 years ago
0
fix kallisto install
#388
naumenko-sa
closed
2 years ago
0
Organize environments
#387
naumenko-sa
closed
2 years ago
0
Installation problem conda package libtiff
#386
rchekaluk
closed
2 years ago
1
Incorrect Ensembl release version for hg38 transcripts.yaml
#385
mjsteinbaugh
closed
2 years ago
0
Revert "remove snpeff pin"
#384
naumenko-sa
closed
3 years ago
0
add sv prioritize resource for mm10
#383
naumenko-sa
closed
3 years ago
0
Replace unzip with 7z
#382
djb17
closed
3 years ago
1
rmsk: switch gzip to bgzip and add tabix
#381
leechuck
closed
3 years ago
3
convert NCBI chromosome names ENSEMBL and UCSC
#380
naumenko-sa
closed
3 years ago
0
update dbsnp for hg19 and grch37
#379
naumenko-sa
closed
3 years ago
0
fix dbsnp hg38
#378
naumenko-sa
closed
3 years ago
0
update dbsnp for hg38
#377
naumenko-sa
closed
3 years ago
0
update clinvar to 20210110
#376
naumenko-sa
closed
3 years ago
0
provide dependecies for bcbio2se.R script in r36 (4.0) environment
#375
naumenko-sa
closed
3 years ago
0
Don't use both mamba and conda to install packages
#374
lbeltrame
closed
3 years ago
0
add af_only_gnomad resource in hg19
#373
naumenko-sa
closed
3 years ago
0
Support hg19 mappability resources for PureCN
#372
lbeltrame
closed
3 years ago
2
Revert ensemble-vep to version 100
#371
hackdna
closed
3 years ago
1
update vep
#370
matthdsm
closed
3 years ago
1
Add new htslib1.11 environment with SCRAMble package
#369
hackdna
closed
2 years ago
2
Revert "Explictly use gzcat." gzcat is absent in many Linux installat…
#368
naumenko-sa
closed
3 years ago
0
fix purecn recipes
#367
naumenko-sa
closed
3 years ago
0
add simple_repeat recipe to hg38
#366
naumenko-sa
closed
3 years ago
0
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