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http://www.nature.com/ng/journal/vaop/ncurrent/full/ng.3525.html
cancer_study_id: bcc_unige_2016
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#### Current behavior:
20 genes are discovered to be uncorrelated with their corresponding reactions in `Fructose and mannose metabolism`/`Galactose metabolism`.
| Gene| UniProtID | Reacti…
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Need to check this in case there was an error in conversion.
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Hola, cuando trato de hacer un Heatmap me sale el siguiente error:
Secretion_system_htn%
+ drop_na(Cycle) %>%
+ get_subset_pathway(Cycle, "Secretion system")
>
> plot_heatmap(tibble_ko=Se…
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Thank you for your great tool!
I'm using EggNOG mapper to annotate my non-model organisms for subsequent enrichment analysis. The mapper outputs GOs for each gene and other terms in KEGG KO, Pathwa…
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These days, I helped Liming to do some flux analysis and found that the present yeast model can't predict the flux through PPP pathway. While the model corrected by Rui could do it well. So it is esse…
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Hi team,
After run gsva, I have pathway score. Then I try to find association between pathways of interested using cor.test(). However, when I pick two random pathways to find their association, it…
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Hello,
I am stuck at generating a heatmap for the KEGG pathway analysis. All the above steps went well (i think) but when I run the following command in R:
d3heatmap::d3heatmap(path_table, sho…
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Previously, we wanted to add at least one top level PW ontology tag (PW_0000002, PW_0000003, PW_0000004, PW_0000013 and PW_0000754) for each PW. However, since we now have the PW ontology in our endpo…
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just like to perform the enrichment analysis, How can kinase targets be predicted by WebGestaltR function. for example:
> rankFile outputDirectory enrichResult enrich…