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This issue is intended to discuss and collect how we can transition to the novel ID data structure.
Eventually, we will have some replacement for the quant. data structures as well but it is unrealis…
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I got the following when running Dia-NN on a set of six Thermo raw files:
```
DIA-NN 1.7.12 (Data Independent Acquisition by Neural Networks)
Compiled on Oct 1 2020 21:36:38
Current date and ti…
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Hi,
Thanks a lot for the nice-to-use package!
I am trying it out on some proteomics data currently, but I consistently encounter an issue during the analysis step. `WGNCA.find_modules()` ident…
bwmr updated
3 months ago
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#### What analysis module should be updated and why?
CLK1 correlations module script 03-plot_SR-phosp_vs_CLK1-RNA.R
and splicing factor dysregulation module script 02-plot_SFs_rna_vs_prot.R
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I am trying to process couple of timsTOF-pro raw-files from [MaxQuant analysis](https://fuzzylife.substack.com/p/proteomics-data-processing-with-maxquant) using [timscovert-ed data](https://fuzzylife.…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/lisiarend/PRONE
Confirm the following by editing …
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Hi
I am just starting to use DIA NN. It has been producing great results for us when we did cell lysate.
I recently did a project with in vitro phosphorylation. I have 4 samples. A and B were mo…
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Informed metabolomics and NOM search space
Due to the metabolome's highly complex and still largely undiscovered molecular composition, de novo
analysis strategies, often used in proteomics and genomi…
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See https://microbiomedata.github.io/submission-schema/WaterInterface/
If I look at the linkml source for slot analysis_type for this class has both required and recommended are both set to true.
…
aclum updated
4 months ago