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d3b-center
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pbta-splicing
Splicing analysis across the PBTA
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oncoprint
#426
naqvia
closed
1 month ago
0
CLK1 PSI survival models
#425
rjcorb
closed
1 month ago
0
LGG cluster intersection with fusions
#424
naqvia
closed
1 month ago
1
update HGG,MB,ATRT surv models with resection covariates
#423
rjcorb
closed
1 month ago
0
Updated analysis: add resection covariates to survival models
#422
rjcorb
closed
1 month ago
0
rerun cluster plots (1/2)
#421
jharenza
closed
1 month ago
0
update histologies for IDH mutant tumors
#420
jharenza
closed
1 month ago
1
Rokita/v10 survival rerun
#419
jharenza
closed
1 month ago
0
V10 survival - rerun
#418
jharenza
closed
1 month ago
1
re-run
#417
naqvia
closed
1 month ago
2
mv HGG PNOC to DIPG (1/N)
#416
jharenza
closed
1 month ago
0
update clustering for under 40 cohort
#415
jharenza
closed
1 month ago
1
full re-run
#414
naqvia
closed
1 month ago
2
v10 release
#413
naqvia
closed
1 month ago
0
Re-run modules with new histolologies
#412
naqvia
closed
1 month ago
1
Subset under 40
#411
naqvia
closed
1 month ago
2
Update title
#410
jharenza
closed
2 months ago
0
Updated analysis: run with gtex controls
#409
naqvia
closed
2 months ago
1
readme updates
#408
naqvia
closed
2 months ago
0
Rokita/table rerun
#407
jharenza
closed
3 months ago
1
update docker image to pull in new annofuseData
#406
jharenza
opened
3 months ago
1
Updated analysis: update all readmes
#405
jharenza
closed
2 months ago
1
update colors of kinase plot per priyanka feedback
#404
jharenza
closed
3 months ago
0
Updated analysis: rerun tables
#403
jharenza
closed
3 months ago
1
update dims SBI plot
#402
jharenza
closed
3 months ago
0
change recurrent cut-off to 17%/histology
#401
naqvia
closed
3 months ago
1
Updated analysis: Histology-specific splicing
#400
naqvia
closed
3 months ago
1
using oncokb
#399
naqvia
closed
3 months ago
6
Updated analysis: update oncogene/tsg lists/plots
#398
jharenza
closed
3 months ago
1
update-dockerfile
#397
jharenza
closed
3 months ago
0
added tab to S5
#396
naqvia
closed
3 months ago
0
rm nf1 tracks from oncoprint
#395
jharenza
closed
3 months ago
0
Updated analysis: oncoprint - remove NF1 tracks
#394
jharenza
closed
3 months ago
0
CRISPR intersection with CLK1 targets
#393
naqvia
closed
3 months ago
4
subset 10 DMGs before zscoring for single sample heatmap
#392
jharenza
closed
3 months ago
0
fix labeling on plots, add cor
#391
jharenza
closed
3 months ago
0
Updated analysis: polya vs stranded PSI corplots
#390
jharenza
closed
3 months ago
0
prioritize hope in script 06, add NF1-201 to cor plots and heatmaps
#389
jharenza
closed
3 months ago
0
run script
#388
naqvia
closed
2 months ago
6
rm tgen samples from gtex plot
#387
jharenza
closed
3 months ago
0
Updated analysis: remove TGEN controls from normal CLK1 plot
#386
jharenza
closed
3 months ago
0
added SFs to suppl tables
#385
naqvia
closed
3 months ago
0
CTG plot update
#384
naqvia
closed
3 months ago
1
Updated analysis: suppl table
#383
naqvia
closed
3 months ago
1
functional site matrix generation/clustering (2/2)
#382
jharenza
closed
1 month ago
3
update gender colors in cohort summary plot
#381
jharenza
closed
3 months ago
0
v9 release modification: freec wxs to consensus (1/2)
#380
jharenza
closed
3 months ago
3
make clean oncoprint branch, adding SF oncoprint (2/2)
#379
jharenza
closed
3 months ago
3
v9 release - update to tumor only maf
#378
jharenza
closed
4 months ago
0
DGCA has been removed from CRAN, does not install via github
#377
jharenza
closed
3 months ago
2
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