d3b-center pbta-splicing issues

d3b-center / pbta-splicing

Splicing analysis across the PBTA

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oncoprint

#426 naqvia closed 2 months ago
0
CLK1 PSI survival models

#425 rjcorb closed 2 months ago
0
LGG cluster intersection with fusions

#424 naqvia closed 2 months ago
1
update HGG,MB,ATRT surv models with resection covariates

#423 rjcorb closed 2 months ago
0
Updated analysis: add resection covariates to survival models

#422 rjcorb closed 2 months ago
0
rerun cluster plots (1/2)

#421 jharenza closed 2 months ago
0
update histologies for IDH mutant tumors

#420 jharenza closed 2 months ago
1
Rokita/v10 survival rerun

#419 jharenza closed 2 months ago
0
V10 survival - rerun

#418 jharenza closed 2 months ago
1
re-run

#417 naqvia closed 2 months ago
2
mv HGG PNOC to DIPG (1/N)

#416 jharenza closed 2 months ago
0
update clustering for under 40 cohort

#415 jharenza closed 2 months ago
1
full re-run

#414 naqvia closed 2 months ago
2
v10 release

#413 naqvia closed 2 months ago
0
Re-run modules with new histolologies

#412 naqvia closed 2 months ago
1
Subset under 40

#411 naqvia closed 2 months ago
2
Update title

#410 jharenza closed 3 months ago
0
Updated analysis: run with gtex controls

#409 naqvia closed 3 months ago
1
readme updates

#408 naqvia closed 3 months ago
0
Rokita/table rerun

#407 jharenza closed 3 months ago
1
update docker image to pull in new annofuseData

#406 jharenza opened 4 months ago
1
Updated analysis: update all readmes

#405 jharenza closed 3 months ago
1
update colors of kinase plot per priyanka feedback

#404 jharenza closed 3 months ago
0
Updated analysis: rerun tables

#403 jharenza closed 3 months ago
1
update dims SBI plot

#402 jharenza closed 3 months ago
0
change recurrent cut-off to 17%/histology

#401 naqvia closed 4 months ago
1
Updated analysis: Histology-specific splicing

#400 naqvia closed 3 months ago
1
using oncokb

#399 naqvia closed 4 months ago
6
Updated analysis: update oncogene/tsg lists/plots

#398 jharenza closed 4 months ago
1
update-dockerfile

#397 jharenza closed 4 months ago
0
added tab to S5

#396 naqvia closed 4 months ago
0
rm nf1 tracks from oncoprint

#395 jharenza closed 4 months ago
0
Updated analysis: oncoprint - remove NF1 tracks

#394 jharenza closed 4 months ago
0
CRISPR intersection with CLK1 targets

#393 naqvia closed 4 months ago
4
subset 10 DMGs before zscoring for single sample heatmap

#392 jharenza closed 4 months ago
0
fix labeling on plots, add cor

#391 jharenza closed 4 months ago
0
Updated analysis: polya vs stranded PSI corplots

#390 jharenza closed 4 months ago
0
prioritize hope in script 06, add NF1-201 to cor plots and heatmaps

#389 jharenza closed 4 months ago
0
run script

#388 naqvia closed 3 months ago
6
rm tgen samples from gtex plot

#387 jharenza closed 4 months ago
0
Updated analysis: remove TGEN controls from normal CLK1 plot

#386 jharenza closed 4 months ago
0
added SFs to suppl tables

#385 naqvia closed 4 months ago
0
CTG plot update

#384 naqvia closed 4 months ago
1
Updated analysis: suppl table

#383 naqvia closed 4 months ago
1
functional site matrix generation/clustering (2/2)

#382 jharenza closed 2 months ago
3
update gender colors in cohort summary plot

#381 jharenza closed 4 months ago
0
v9 release modification: freec wxs to consensus (1/2)

#380 jharenza closed 4 months ago
3
make clean oncoprint branch, adding SF oncoprint (2/2)

#379 jharenza closed 4 months ago
3
v9 release - update to tumor only maf

#378 jharenza closed 5 months ago
0
DGCA has been removed from CRAN, does not install via github

#377 jharenza closed 4 months ago
2