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Hello, I am curious about the meaning of "PASS" actually, how exactly is this evaluated? I noticed that filtering on "PASS" I am missing some variants. For examples, some variants with a GQ of 50 have…
ghost updated
4 years ago
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Hello,
I've been trying to install and use paleomix and always get an error when trying to use GATK (can't locate file GenomeAnalysisTK.jar)
I've found out that in GATKv4, there is no more jar file …
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Thank you for your work in developing this tool,
We are wondering about samples which have `YO:Z:N/A` for the YO tag. Is this expected behavior and if so would you be able to provide any detail on…
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I'm flying through a world I'm wanting to save, and then suddenly, the entire game crashes. Gives me this crash report:
```
---- Minecraft Crash Report ----
// Why did you do that?
Time: 09/0…
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The usage message for the primary sequence_handling script does not list the handlers by the correct number for each option. For example, NP_Quality_Assessment is listed as "17" but it is option 15 …
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My team recently performed two separate identical runs of abra2 (version 2.15) on copies of the same set of BAM files. We expected the resulting processed BAMs to be identical in size between the two …
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I was interested in understanding how heterozygous alt cases are dealt with, and came upon the explanation in [pileup_image.py](https://github.com/google/deepvariant/blob/r0.8/deepvariant/pileup_image…
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Hello.
After updating the plugin to 1.0.32 the current latest PHPStrom version is running out of memory as soon as I open up the `composer.json` file.
I would love to give you more information…
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*Hi team*
*I was trying to run some jobs and seems my jobs stuck at recalibartion step. Specially after this error.*
*[2017-10-15T12:03Z] hpcfatnode01.research.sidra.local: ERROR StatusLogger Unab…
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When running sample data provided in test folder getting error 'No annotation.csv found'
Error log is as follows:
setting up MToolBox environment variables...
...done
setting up MToolBox va…