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Good morning,
I'm trying to install repeatModeler and all its dependencies; I've so far compiled/installed RepeatMasker (with HMMER), RECON, RepeatScout, and TRF but I'm having trouble with RMBast:
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Dear everyone.
I try to run RepeatModeler with Singularity.
_(#!/bin/bash
#SBATCH --time=48:00:00 # hh:mm:ss
#SBATCH --ntasks=1
#SBATCH --cpus-per-task=64
#SBATCH --mem-per-cpu=4000 # megaby…
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Hi @nextgenusfs
This is more a query, and not a problem. Just wanted to get that out there right away 😅
I have used funannotate many times, and I am installing onto a new HPC for the new lab I …
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- [ ] Let's update the apollo slide deck to give a bit more time to moving around, controls, etc.
- [ ] We need to add sixpack to the GTN tutorial datasets, that'll give a better demo in some places,…
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I came upon this while searching for singularity recipes for funannotate.
I'm trying to install funannotate on an HPC cluster using singularity, without root or docker available.
The steps in the Do…
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Hi,
I am trying to use RepeatModeler-2.0.1, installed with dependencies:
```
RepeatModeler Version 2.0.1
===========================
Search Engine = rmblast 2.10.0+
Dependencies: TRF 4.10, REC…
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The first step in the workflow (assembly) is performed per sample and is in `assembly.nf`. @NeginValizadegan will work on the annotation steps for each sample assembly, with the basic steps:
1. Fi…
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Thank you for your helpful [pipeline](https://github.com/SIWLab/Lab_Info/wiki/Ageing-LTR-insertions) about aging LTR insertions.
But the [scripts](https://github.com/tvkent/BMap/blob/master/Script…
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Hi Shujun,
Thank you very much for providing EDTA to the world.I have installed the latest EDTA v2.2.1 using conda and run the test file successfully. However, when I ran my own data, I encountered…
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Hi,
I am trying to create the environment for ngs_te_mapper2. I have attempted to use either mamba or conda with:
mamba create -n ngs_te_mapper2 --channel bioconda ngs_te_mapper2
or conda …