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My purpose for using Riboseq is to help define what the CDS, 3' or 5' UTR are for the RNA-Seq and Ribo-Seq data I have. I like the `ribo` data structure developed and the implementation of riboflow, b…
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Dear rp-bp authors,
sorry for bothering again. While running "run-all-rpbp-instances" I get the following error:
run-all-rpbp-instances \
> /icgc/dkfzlsdf/analysis/…
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I reproduced the same error with the test-data set and tried to provide all the information needed for fixing the bug.
Thanks a lot.
**Description**
Test run fails during extract-metagene-profil…
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Dear authors,
We are able to run rp-bp now with "default" options. However when only adding the de_novo_gtf in the config file, we are facing some problems during prepare_rpbp_genome.
The error is…
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**Describe the bug**
Pipeline gets stuck on p-site QC. These seems to be a recurrent issue where the pipeline runs into issues with running riboWaltz consistently. Will try to get to the issue this w…
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Hey @SweetiePi
I've had this design idea for a bit to make an email flyer / poster out of. I put it together but I still think it's missing a little bit of a design element to tie it all together.…
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Thank you for creating such a wonderful tool. It already has helped me a lot!
I try to use ORFik to score novel ORF identified from Ribo-Seq data and as reference I used `computeFeatures` function on…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/jianhong/ribosomeProfilingQC
Confirm the followin…
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See the same issue in riboutils: dieterich-lab/riboseq-utils#7
The link also includes a temporary fix.
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TSS and TermSeq creation are Listeria specific for the moment
```
TSS.createTSS(exp);
TermSeq.createTermSeq(exp);
```
Change that and make it uniform with the way RNASeq are read.
Need to manage…