-
Hello,
Thank you for amazing tool.
I am new to CNV analysis using RNA-Seq.
Is it possible to use CaSpER for a single bulk RNA-Seq sample such as a tumor sample from a single patient?
Thank you…
-
dsb does not run when half the samples are rna + adt, half the samples are rna only (and no intersection between rna,adt is taken).
fix is to take the intersection of the background: mu.pp.inters…
-
**Steps to Reproduce**
1. Switch to Macro mode -> Sequence mode
2. Add sequence letters and select any
3. Right-click on selected letters and choose 'Modify in RNA builder'
4. Press 'Esc' button
…
-
Hi,
10x has a newish product ["flex"](https://www.10xgenomics.com/products/single-cell-gene-expression-flex) that allows for the sequencing of fixed nuclei.
It works based on [a set of 20 000 pr…
-
#### Which new datasets are being added with this release?
#### What is the sample breakdown (number of WGS, WXS, RNA-Seq, Panel, Methylation, other)?
https://d3b.atlassian.net/browse/BIXU-3767
…
-
I really like your preprint and I would love to use it for direct RNA sequencing.
Do you happen to work on adjusting the UNCALLED for direct RNA sequencing? Given that an accurate RNA k-mer model is …
-
### Report
Hello,
When running the lda visualisation plot as part of the mixscape workflow, I am not getting consistent results between runs, the plot looks slightly different (although very simil…
-
Several grammar and spelling mistakes...
-
We will track these properly somewhere, (and document ) as I guess it could happen a lot ....
Original SPNCRNA the last one used was SPNCRNA.1712 nc-pho1
SPNCRNA.1713 reserved for Mo
Jurgs blo…
-
Current SBOL RNA-related glyphs (i) do not capture the range of RNA functions and (ii) where they do exist are not expressive enough to precisely annotate the RNA function. A new set of glyphs that mo…