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Hi,
Can we use megahit as a denovo assembler to assemble rna-seq data?
Best,
Kun
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Hello!
I now have RNA-seq data and full-length transcriptome data from several tissues, and I used "Trinity genome-guieded" to get the transcript "Trinity-GG.fasta" of the RNA-seq . At the same time,…
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Hi @moonwatcher,
This tool is super helpful as I am trying to implement a new single cell protocol called [scifi-RNA-seq](https://www.nature.com/articles/s41592-021-01153-z). I have been able to ge…
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Data.Name | Sargasso.Strategy | difference | bisulfite | master
-- | -- | -- | -- | --
rna_mouse_10 | best | 00:00:11 | bisulfite_seq=00:13:30 | master=00:13:41
rna_mouse_10 | conservative | -0.00…
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From NeMO-Analytics created by [RLC-DCPPC](https://github.com/RLC-DCPPC) : RLC-DCPPC/NeMO-Analytics#2
Top-level issue to contain sub-tasks:
- [ ] in vivo cortex development bulk RNA-seq (#9)
…
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I'd like to use the `integrate_ChIP_RNA()` function to find the targets of my TF of interest. I have the RNA-seq differential gene expression result (TF inhibitor drug vs. vehicle control RNA-seq data…
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We use merged platform because adding RNA-Seq data require that the same platform is used for all the samples. This is unnecessary because ultimately these platforms get replaced by a generic expressi…
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MINSEQE:
RNA-Seq (and others) should be changed to RNA-seq or cases need to match between applications.
sequencing_date is sequencing_data
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I have been using TEcount for estimating TEs in total RNA-seq data which has worked great. However, I want to combine this with methylation data and there we have methylation differences at the transc…
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I'm also getting a similar error for bulk-RNA data,
```
> bam_files
MCAO1 MCAO3 MCAO4 Shame1
"../…