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When trying to deploy the v0.1.0 and v0.1.1 releases, we ran into errors where containers were not being pulled as expected, leading to repeated failures. Test runs do just fine, but the later runs st…
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### Description of feature
Make containers and integrate them into the pipeline
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### Description of the bug
Failed to pull BEDTOOLS singularity image
### Command used and terminal output
```console
Sep.-20 18:49:13.796 [Task submitter] INFO nextflow.Session - [3b/0db9e9] Submi…
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I run a pipeline using nextflow-tower and it worked. Then, I run the same pipeline with a different parameterization from nextflow tower but now I am getting this error. However, I was able to run it …
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It would be great to be able to download Singularity / Apptainer images as flat files, without needing to have the tools installed locally.
According to @pditommaso:
> it should be doable resolv…
ewels updated
7 months ago
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Wave in Nextflow is beautifully simple - no need to define `container` URIs, just the conda package names and we get everything for free. However, for wide adoption (or at least, adoption in @nf-core)…
ewels updated
5 months ago
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## Bug report
I have a RNA-seq pipeline I've been using for a while on GCP with success. Recently, I noticed that when processing medium/large datasets, I get a `NOT_FOUND` error and the workflow …
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**Describe the bug**
The full content of the blog post is not shown in my RSS feed reader (Thunderbird mail reader). Just
```
TUI or not TUI? That is the question.
```
Blog posts from Quarto …
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## Published Output Validation
At the moment, Nextflow is conservative in when it writes published outputs. If a file exists in the publishDir location, then Nextflow does not re-publish the file. …
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In some circustances the same job is checked for completion more than once. See the log below for example:
```
2024-10-29 10:10:22.087 09:10:22.086 [jobs-queue-thread-0] TRACE i.s.wave.service.k8s…