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Dear Hyphy Team,
Thanks for developing and maintaining this great set of tools!
I've been trying to run RELAX on ~14k ortholog alignments, from 6 species.
I installed the newest version from sou…
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Author Name: **Bernd empty** (Bernd empty)
Original Redmine Issue: 3061, https://redmine.open-bio.org/issues/3061
Original Date: 2010-04-22
Original Assignee: Bioperl Guts
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Hi
Something I s…
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I find that with a query of more than ~30 reads I get the following error:
Error: 20File_write_exception: Error writing file out.daa (696/5)
With fewer than ~30 reads, no error occurs. Furthermore,…
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Hi,
I want to try fastspeech on different dataset. therefore, can you share how to extract alignment from tacotron2?
I tried this code, but get bad result for synthesis when inference long sent…
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Hi,
Quite impressed with the speed at which mmseq performs pairwise alignments. Have a couple of questions:
1. Can i perform alignments using sequences with degenerate characters? Right now the…
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Hi,
I am struggling to run the step4 of the pipeline, I have the flanking.read produced but not the fullreads:
/home/cecile/Desktop/Postdoc_cecile/2_Zymo/4-Mutation_accumulation_analysis_TE_dyna…
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There are a variety of exclusion techniques for input parameters that apply to different tools. Additionally, metadata, specifically defaults for input parameters may not be able to be applied in a tr…
ramou updated
5 years ago
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Hello everyone,
I'm running orthofinder and I faced with a problem at step making gene tree (MSA). It's warning that list index out of range. and the number of ortholog is low percentage (40%).
Doe…
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Hi,
I am using sortgrcd v2.1. I am finding potentially strange behaviour when I output in any of the newly supported formats (-O 3, 6, 7, 8). If more than one target sequence hits a particular region…
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If the sequence set was not changed and the alignment program parameters are still the same a cached version of the alignments can be used.