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Hi everyone! I am a PhD candidate and a very beginner of spatial transcriptomics. Please help me...
I have CosMx dataset of 3 different samples (S0, S1, and S2) and try to analyze and compare them …
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Hi I am getting following error during minimization
` Terminating with uncaught exception : An internal array in Spatial requested 55350 elements, but only 52896 (48*1102) were allocated. Please i…
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Dear,
Thanks for your great working for spateo.
I want to ask a question. Can I use the level data(bin15) not use cellsplited to make 3D visualization? At present, my adata only have the following…
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`DataCube.aggregate_spatial(geometries)` currently allows geometries to be a string or `pathlib.Path`, but then it assumes this is a backend-side path and "loads" this with non-standard `read_vector`.…
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Hi,
First, thanks for developing the Imaging Transcriptomics toolbox—it's been incredibly helpful for my research.
I have a quick question about the models of partial least-squares (PLS) regress…
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The error messages indicates that the qid failed to be generated. spatial-hub was fixed by adding a redirect in sandbox nginx from biocache-service/qid to biocache-service/webportal/qid, and this work…
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`filter_spatial` explicitly mentions support for points and lines (alongside polygons) in the provided geometry.
While `spatial_extent` in `load_collection` is most commonly used with a bounding bo…
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A set of backbone and decoder models must be supported in terratorch, as U-Nets and ASPP (Atrous Spatial Pyramid Pooling).
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Hi I am trying to load some 10x Visium data using TENxVisiumList, but am not able to load the data at all. I have verified that the data is there and in the correct form:
> file.exists("/Users/adi…
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### Description of feature
Apparently this is a thing now (e.g. 10x spatial transcriptomics + mixcr, e.g. in [this paper](https://www.sciencedirect.com/science/article/pii/S1074761322000814?via%3Dihu…
grst updated
4 months ago