-
Hi I am trying to repeat some analysis that I have managed to run in the past, but now when I am running it on our hpc, it is no longer working. I got the error below no matter what focal_id I use:
…
-
Dear einprot developers,
Currently einprot supports the following species
```
> getSupportedSpecies()
taxId species speciesCommon
1 10090 …
-
We modified our metawrap install to use --preload for Kraken (detailed elsewhere). Now, it fails to generate krona files as well as (obviously) kronograms.
```
drwxr-xr-x 2 rwr002 gdlauberlab 4.0K …
-
magnet.py takes taxonomy identifier and abundances percentage as input. I was wondering if i can make a tsv with these columns from output of other tool and run this ? Are there are caveats or whether…
-
Since we are dependent on the taxIDs in the genbank file all being the same but we dont actually ever check this, we should check it. I should also put this in as part of the consistency checking scri…
-
Hi,
I am trying to add genome of interest into my kraken database. The genome is not available on NCBI and I have downloaded it from somewhere else. The tax IDs for the genome are present in both nod…
-
When reading the data we should use unified column headers for downstream processing.
Current header in MAF are (plus potential mapping)
`database_identifier`
`chemical_formula`
`smiles` => `smile…
-
I was getting the following error message, when I tried to run the combine_bracken_outputs.py with Python3.6
`File "/media/data/Sunbeam/sunbeam-dev/Bracken/analysis_scripts/combine_bracken_outputs.py…
-
Hello developer，
I have trouble with running blobology module. I use this command
`metawrap blobology -a ASSEMBLY/final_assembly.fasta -t 30 -o BLOBOLOGY --bins BIN_REFINEMENT/metawrap_bins C…
-
**MIBiG ID**
BGC0002347
**Short summary**
The Genbank file for BGC0002347 has taxid set to 65497 but should be updated with the new taxonomic id (2893586)
` /db_xref="taxon:65497"`
From NCB…