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Hi,
It is a fantastic method for analyzing spatial transcriptomics!
In paper, you say "Although the original annotation had 12 reference clusters (Fig. 3A), we set the number of clusters in our …
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I am working on calling variants in spatial transcriptomics data (10x Visium). Since the sequencing depth of spatial transcriptome is poorer than single-cell data, I want to treat all reads in the bam…
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Hello,
I have another quick question regarding the use of the method FUNNEl. Is the algorithm suitable for single cell data ( analysis is the study of transcriptomics at the single cell level.)?
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/Gionmattia/terapadog
Confirm the following by edi…
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https://docs.google.com/document/d/1TMMcNiS7_oM9P3FZ0WNYp0aUOjokI3cbRkKeeB9Y_iI/edit
Ontology annotation:
Gene names, cell types, tissues, and diseases.
Experimental assay types (ChIP-seq--antibo…
FuqiX updated
3 years ago
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Blurb / summarize this: https://www.biorxiv.org/content/10.1101/2024.08.02.606405v1.full.pdf
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This is currently based on the presence of the table **TranscriptionSummary**. We want …
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**DO NOT INCLUDE REQUESTS IN THE FIRST COMMENT.**
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# General Notes
This repository serves as a mostly automated p…
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**DO NOT INCLUDE REQUESTS IN THE FIRST COMMENT.**
**PLEASE POST THIS TEMPLATE UNCHANGED THEN FOLLOW ITS INSTRUCTIONS IN A NEW
COMMENT**
# General Notes
This repository serves as a mostly automated p…
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Write a test for the metric using Wilkinson tool that can be assessed against the proteomics dataset.
Maybe create FAIRPlus collection of metrics at same time?