-
Hi, I am trying to run sarek somatic pipeline with dummy tumor and normal sample present in sarek github repository : https://github.com/nf-core/test-datasets/tree/sarek/testdata/dummy
the sample s…
-
### TMB calculation today in BALSAMIC
The current definition is based on https://github.com/Clinical-Genomics/BALSAMIC/issues/51
And the related snakemake rule https://github.com/Clinical-Genomics…
-
-
https://mp.weixin.qq.com/s/HChjCM6l5H8yYnbuEyRMTw
ixxmu updated
9 months ago
-
**Background**:
- **cBioPortal:** cBioPortal is an open-source platform for cancer genomics data analysis and visualization. It provides a centralized resource for exploring and analyzing large-sc…
-
**Description**
An increased percentage of duplication is observed described in https://github.com/Clinical-Genomics/BALSAMIC/issues/1059. Looking carefully at how the percentage of duplicates is r…
-
https://mp.weixin.qq.com/s/st2LuC6JHkfLMt2NvbTLeg
ixxmu updated
6 months ago
-
https://mp.weixin.qq.com/s/WQdaPedEwmREgx6wgEhaqQ
ixxmu updated
7 months ago
-
We don't currently have the possibility to get the `container` definitions that are used within any given Nextflow pipeline via `nextflow config` or any other existing nextflow command. This is partic…
-
**Is your feature request related to a problem? Please describe.**
Decreasing the turn-around-time for these analyses are important. Typically a sequencing run produces 4 sets of fastq-pairs for on…