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Hello,
I'm running inferCNV on 10X ST data wherein a spot represents a cell. I've gotten to step 3, but it throws an error about x not having at least 2 dimensions. Please see screenshot.
I saw a…
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vcf file:
##fileformat=VCFv4.2
##FORMAT=
##FORMAT=
##FORMAT=
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT TUMOR NORMAL
2 220439700 . G GCT . . . GT:AD:DP 0/1:21,72:93 0/0:51,0:51
3 52437426 …
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For the Variant Annotation model, we want to provide a value set for Diseases to support standard capture of disease references in VA Statement types - where we need to capture the Disease that a var…
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Hi,
I'm trying to use Pisces to call a tumour-only sample. I'm using the following command:
```shell
$ dotnet Pisces.dll -bam tumour.bam \
-CallMNVs false -g hs37d5 -gVCF false \
-i h…
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I am trying to use GDCprepare on a query for CNV data with legacy = T, but I get the error :
> Error in if (query$data.type == "Gene Level Copy Number Scores") { :
missing value where TRUE/FAL…
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**Is your feature request related to a problem? Please describe.**
No
I think an essential usecase is to be able to fine tune a model. Currently the code can load a model then continue training all …
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I run nnUNet on **KiTS23** dataset and everything went fine during the training process.
However, the following error occurred during the subsequent verification process:
**IndexError: index 189 i…
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### Operating System
Other Linux (please specify below)
### Other Linux
_No response_
### Workflow Version
v1.3.1
### Workflow Execution
Command line (Cluster)
### Other workflow execution
_N…
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Hi! Thanks for developing CBNplot! I just want reproduce the documentation of CBNplot, but some codes cannot running successfully in Win10. By the way, could you share the file, _tcgablcaData.rda_? or…
Ci-TJ updated
2 years ago
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Recently, XPlane2Blender has gotten a lot more involvement with the community - from #397's request for samples to discussions about 2.8's use of collections (#450) and more, and also private testing …