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I am using `conda version 4.9.2` with `python version 3.7.9`
I am getting this error while trying to install clodius.
`pip install clodius`
```
Defaulting to user installation because normal sit…
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It would be nice to have a suite of example tools to further show off the syntax and utility of hts-nim.
Please leave a comment here with a description.
The strengths of hts-nim are speed, so thi…
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During `make` of pufferfish I'm getting the following error. You can see just above the error it does the presence and sanity checks for `zlib.h` and all good, so something wrong with an include path …
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Hello!
Interesting looking library.
I'm trying to read a header from a bgzip file. Also new to rust. Any help would be appreciated.
```rust
fn load_header(infile: PathBuf) -> Result {
use b…
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**1. What were you trying to do?**
I tried to call vcf for each splitted chromosome after aligning short reads against the variation graph.
**2. What did you want to happen?**
Vcfs for all…
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I am trying to compile Hera 1.2 using the `build.sh` script, and compilation fails due to missing source code files. Here is the end of the compilation messages:
```
gcc -fgnu89-inline -O2 -w -lrt…
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Trying to call `seek` on a cram file raises `NotImplementedError`. Is seek possible on a cram file? The corresponding `tell` method does seem to work.
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I'm pretty sure this is a hadoop-bam issue, but I'm finding that any BAM produced by bwa (VN 0.7.16a-r1181) will not load in Spark. The BAM loads successfully in ValidateSamFile (although it throws er…
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The specifications for tabix and csi are incomplete, currently being variously only essentially a struct layout with no semantic explanation or restrictions, or a description of the underlying storage…
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Currently `gffread` dies with segmentation fault when trying to extract features from a BGZIPped, indexed genome sequence.