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Hi,
The IOBR::calculate_sig_score() function no longer works with R version 4.4.0, Bioconductor release 3.19. Particularly the function calculate_sig_score_ssgsea() fails because the previous GSV…
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Hi
Sorry, I couldn't find this info but is there a way that I can combine my RNA sce object and ADT sce object (from same experiment) into a MAE? We had previously exported everything as a uni-moda…
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https://marineomics.github.io/DGE_comparison_v2.html
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Hi @federicomarini
Thanks a lot for the great package.
In the "counts overview tab", I wanted to seek guidance on the recommended cutoff to use when filtering based on "threshold on the row mea…
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Hi, I am using a rstudio server with R/4.1.0.
And I ran into a problem installing HDO.db for DOSE:
>BiocManager::install("HDO.db")
'getOption("repos")' replaces Bioconductor standard repositories, …
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Currently when running projectR by itself, we run the command with `full=FALSE`, which returns just the projection weights. However, there was a request from a lab to return the full output which ret…
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Related to https://github.com/scverse/anndataR/pull/183#discussion_r1830509620
Are we aiming for a CRAN or a BioConductor release?
What are the pros for both platforms?
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Hi Simon,
Your package looks very interesting. It seems that ShinyTron currently only installs packages from CRAN. It will be great if it can install packages from Bioconductor as well.
BTW, is…
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Submit the package to Bioconductor.
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This package has been removed from CRAN as of 2023-10-16, so this feedstock needs to be archived.