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Haven't had a chance to look into this one yet. This is the first time I've seen this after hundreds of thousands of jobs, so it must be very rare. Here's the worker log for the failed job:
```
e1f6a…
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Hi!
Im using the tool hal2assemblyHub in order to transform a hal alignment produced with Cactus. I also want to get the conservation track for the Hub. Everything computes as normal until it reach…
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I'm trying to run Cactus on a larger dataset on kubernetes, and this is the latest error `PicklingError: Can't pickle : it's not found as toil.BotoCredentialAdapter`
Is this a Toil problem?
```
863…
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Hi there,
HAL is installed and in my path. However, the following is returned when I try to run hal2assemblyHub:
```
(conda_env) [sfoley@bridges2-login013 ~]$ hal2assemblyHub.py /pathToMyHalF…
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I try to execute a simple code example from [toil documentation](https://toil.readthedocs.io/en/releases-3.7.x/running/running.html#quickstart-a-simple-workflow). Without the batchSystem flag everythi…
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Hello guys,
We encountered the same problem with #129 (No module named 'sonLib.bioio'). According to the suggestion, we setup Python 3.6+ virtualenv and pip install sonLib. Finally, sonLib-1.1.0 wa…
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Hi,
I get this error when running `make test` on hal. I also get the same error when I try to run `hal2assemblyHub.py`.
Example:
> bash-4.2$ hal2assemblyHub.py myhal.hal myhub_hub --lod \
> …
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Hi there,
I'm having trouble using the hal2assemblyHub.py from our computing cluster.
I tried to run hal2assemblyHub.py on a pre-existing .hal file called `group_2_3.hal` and output my results i…
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Hello Glenn,
I was testing a pairwise alignment with cactus using singularity: singularity exec $containerImage cactus jobstore pairwise/2genomes_tree_gzlink.txt pairwise/2genomes.hal --binariesMod…
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Hi,
I'm using Ubuntu 16.04 LTS on virtualbox. I got the following error when running marginAlign for Nanopore reads.
> ---JOBTREE SLAVE OUTPUT LOG---
> Traceback (most recent call last):
> …