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This issue imported from the [Chado v1.4 requested changes](https://docs.google.com/document/d/1t_Jb4XxUPtgGRSKtznsqvjTjmR4vpFHPQROMQ0OZK9A/edit) google doc:
http://gmod.827538.n3.nabble.com/propos…
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The idea is to allow a user to write their own export class if they have a different version of GFF3, Chado, etc. and then have that available the Sequence Panel.
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We must improve the way Apollo handles pseudogenes.
Currently, Apollo treats pseudogenes as separate entities with PARENT pseudogene and child transcript, and separate from any other isoforms of the…
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Hello all,
We are working on a way to add additional information to a feature_cvterm association. We would like to specify an analysis_id for a feature_cvterm record. We would also like to specify …
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1.
Does every protein that is a target of a protein modifying enzyme
https://www.pombase.org/term/GO:0140096 (catalytic activity acting on a protein)
have the reciprocal modified-by protein-blah…
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- Load `json` as text in `props` table.
- On `insert` a hook loads the same `json` to a `hstore` column in a new table.
- To `encode/decode` data in `hstore` format use [`Pg::hstore`](https://met…
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```
Running 'Chado SSR Loader' importer
NOTE: Loading of file is performed using a database transaction.
If it fails or is terminated prematurely then all insertions and
updates are rolled back …
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Hi,
I would like to set synteny view between my species (Organism A) and 30 other species (Organism B). However, it seems that the synview will work only if the gene fetures of both the A genome an…
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@laceysanderson said in https://github.com/GMOD/Chado/issues/59
>I would worry a bit about this causing inconsistencies in the database. For example, what if your transcripts for a given analysis a…
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Example:
Resulted in a Gateway timeout, but ~50 minutes later:
10.24.27.234 - - [27/Sep/2017:16:49:57 -0500] "GET /blast/report/PytsAHi HTTP/1.1" 504 247
BLAST results were generated b…