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When searching with unspecific digestion (Search Settings - Identification settings - Spectrum Matching - Digestion) and MS AMANDA, in the corresponding settings_SearchGUI.xml (/resources/MS Amanda/wi…
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Hi @amykglen,
I'm wondering if we can keep the longest description from one of the preferred curies' synonyms in KG2C. Here is an example:
For the curie `CHEMBL.COMPOUND:CHEMBL1199307` in KG2C …
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Hi Harald,
I have search results from Mascot, MSGF+ and X!Tandem. When I try importing the results using PeptideShaker, I get an error at the building peptide and proteins step after computing prob…
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I'd like to propose a glyph for type IIs restriction endonuclease sites, a feature used in diagrams of Golden Gate assembly and especially in MoClo-like hierarchical DNA assembly part/cassette/multige…
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Dear SearchGUI developers,
after I updated SearchGUI to version 4.0.29 and PeptideShaker to ver 2.0.21, I got the error message "Overflow detected." right after starting the search (direct in Import…
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I observe the following error when running SearchGUI from Galaxy (using the latest version available for Galaxy, i.e. 4.0.12)
```
Fri Mar 12 15:12:56 CET 2021 Importing spectrum files.
10% 20% 30…
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Dear all,
I have my raw files in .t2d and had a hard time converting them to mgf or another universal format. I add to do it by hand, basically.
I am worried I've done something wrong because I'…
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Hi,
I'm going trough all the options, bt I seem not to be able to set a new protease (I digested with GluC followed by Lys-C).
Regards
Robert
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while looking into #1159, I noticed that these three nodes in KG2.3.4 have the name "LAP", but the first item in their `synonym` fields is TGFB_, which seemed slightly odd. then I noticed that if you …
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Hello,
Trying to run this on two samples. It had been running for a while and then finally errored out after tabulating control merged start positions.
`[06/17 05:27:01PM][ERROR][changeseq] Err…