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Hi Christoffer,
On the excel spreadsheet that comes with the river plots... is clonality basically the same as cancer cell fraction (CCF)?
Thanks,
Kristin
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I am getting an error in some of my samples when attempting to run the `computeCellFrequencyDistributions` step:
`Error in density.default(mat[, \"f\"], bw = \"SJ\", adjust = 0.25, kernel = c(\"gau…
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Two normal samples one a NT and the other a NB have no CNV (A739_G09 and A739_H10)
Doesn't make sense. Why?
Because CNV is usually called using a matched normal or pooled normals
Why only two norma…
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Hello
I am trying to adjust my VAF regarding copy number but I am getting this error permanently
```
> inferHeterogeneity(
+ laml,
+ tsb = NULL,
+ top = 5,
+ vafCol = "T_VA…
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Hello,
I'm trying to run a method through DataSHIELD that requires data from multiple tables defined in Opal. I was wondering if it was possible to aggregate dataframes from multiple tables on the …
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I tried PURPLE version 2.31 a few minutes ago for the first time and there was an error.
```
16:47:23 - Modelling somatic peaks
Exception in thread "main" java.lang.ArrayIndexOutOfBoundsException…
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Hi,
Thank you for the new release and the ability to annotate variants with purity and clonality, that's incredibly useful. I've got a problem though however running PURPLE during "Modelling somati…
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@davidballi might be better to work in [clonality branch](https://github.com/andrewrech/antigen.garnish/tree/clone_wars), as there are new columns. think it is going to take us a while to merge this.
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Hello, I have an question about the understanding of "Timing Chromosomal Gains". So, after chrTime_annot, the vcf will have an column called "Timing" to each mutation. Can you explain what's this timi…
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Hi,
Thanks for this cool tool!
I have two questions about the visualization of `.by` group data.
Here is my data and metadata.
```R
> names(tcr$data)
[1] "0619_LN1" "0619_LN2" "0619_LN3…