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I have set up the fail threshold to 80%. Considering the coverage is failing for Forms with 66,92 % and Lines with 94,68 %. I'm assuming this threshold takes both or at least Forms into consideration.…
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**Describe the bug**
The value of alignment coverage is miscalculated.
**To Reproduce**
>lcl|NZ_CALUAQ010000001.1_prot_WP_278902228.1_145 [locus_tag=QDJ88_RS00725] [protein=hypothetical protei…
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### Observed behavior
'npm test' run doesn't finish successfully
### Expected behavior
No errors during tests executions
### Steps to reproduce
* checkout repository
* run `cp .env.defaults …
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I have a large genome (~5GB) with N50 ~3Mb, and 30X of Hi-C coverage (uniquely mapped reads)
The assembly is stuck at for two days. I moved to assemble the HiFi reads alone without the Hi-C, which I…
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### Is your feature request related to a problem?
Currently CLI modifies user's `astro.config.ts` via AST transforms using Babel. This works really well but it quite heavy to maintain.
https://git…
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Hi I have know cnvs. I am running spectre for my targeted sequenced data for cancer. I am not getting the output what I expected to see. Also I have trouble understanding the images. Following is the …
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Currently i am hardcoding the threshold values
```
"coverageThreshold": {
"global": {
"lines": 80.00,
"statements": 80.00,
"functions": 80.00,
"branches"…
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## Link to bug demonstration repository
sorry but i'm not able to share the repo because is a security policy from the company.
## Expected Behavior
In my understanding i should see the coverag…
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It would be nice if thresholds were improved in Wallaby.app to better reflect coverage...
| name | color | theshold |
| --- | --- | --- |
| no coverage | grey | 0% |
| low coverage | red | < 25% |
| …
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Hi,
I'm running variant calling on non-model organisms, and for some of the downstream analyses (e.g., nucleotide diversity calculations), it is necessary to generate (possibly boolean) accessibili…