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The ContextPred and Attrmasking methods on the ADMET leaderboard were pre-trained on the ChEMBL dataset (https://doi.org/10.1039/C8SC00148K) in a supervised manner. The ChEMBL dataset contains 1310 bi…
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**Describe the bug**
When run on my data, the last process 'call stars' is terminated and no output alleles is generated. It produce only variants:
BWA-hs37d5.WGS_cyp2d6.vcf.gz
BWA-hs37d5.WGS_cyp…
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**Describe the bug**
On 34x WGS the call for CYP2B6 is *1/*4, but the right call is *1/*1.
Initially computed CN = 2
Sample core variants:
41515263~A>G~0/1
Candidate alleles:
['1.v1_4.v1']
Re…
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Have anyone tested Cyrius with data from a chip or single sequenced gen? Thank you in advance.
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### Model Name
ImageMol
### Model Description
Representation Learning Framework that utilizes molecule images for encoding molecular inputs as machine readable vectors for downstream tasks su…
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@twesigomwedavid I have did all the necessary changes required in nextflow.config to run the stellarPGx with input bam and ref fasta. It is running fine when we are giving single genes but I want to r…
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A new CPIC [guideline](https://cpicpgx.org/guidelines/cpic-guideline-for-statins/) involving ABCG2 has been recently released.
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Genes F5, VKORC1 do not appear in final recommendations file, although they are in DPWG database:
```
{
"factors": {
"F5": "Factor V Leiden heterozygous",
…
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**Is your feature request related to a problem? Please describe.**
The current StellarPGx pipeline may not capture all CYP2D6 reads while the bam file is aligned to GRCh38.
**Describe the solution…
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NOTE: Process `call_stars (SIM001)` terminated with an error exit status (1) -- Error is ignored
```
> nextflow run main.nf -profile standard,test
N E X T F L O W ~ version 21.04.0
Launching …