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Illumina
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Cyrius
A tool to genotype CYP2D6 with WGS data
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TypeError: 'NoneType' object cannot be interpreted as an integer
#41
anh151
opened
7 months ago
0
Warning message
#40
diegomd90
opened
8 months ago
3
Installing Cyrius using pip for ease of use with other python tools
#39
timsanford
opened
8 months ago
3
improved support for index file at non-traditional locations
#38
cariaso
closed
10 months ago
0
Using Cyrius within other tools/workflow management
#37
timsanford
closed
8 months ago
1
snp_count.py:127: UserWarning, haplotype.py:70: UserWarning
#36
timsanford
closed
1 year ago
1
How to correct "ZeroDivisionError: division by zero" ?
#35
PavitaKae
closed
1 year ago
2
WES
#34
shahed9s
closed
1 year ago
1
Cyrius v1.1.1 incorrectly calls GeT-RM sample NA18565 that was correctly called by Cyrius v1.1
#33
VasilisFlouris
opened
1 year ago
1
Questions about odd genotypes
#32
anh151
closed
1 year ago
4
Unknown variants?
#31
yebinkim17
closed
1 year ago
2
processing steps to be on the lookout for in a CRAM?
#30
brettva
opened
1 year ago
1
fetch called on bamfile without index?
#29
yebinkim17
closed
1 year ago
2
'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte
#28
mdAdnn
opened
1 year ago
9
Panel data
#27
AnnaGreenOrebro
closed
1 year ago
1
WGS only?
#26
JARM89
closed
1 year ago
7
Question about "None" phenotype
#25
joseph-yclam
closed
1 year ago
5
ValueError: invalid contig `22`
#24
Giuseppe1995
closed
2 years ago
2
new version?
#23
neoscreen
closed
1 year ago
1
Issue with file path error?
#22
joseph-yclam
opened
2 years ago
3
Error Running CRAM Files
#21
pmbock1
closed
2 years ago
4
Using cyrius on a specific panel of genes not WGS
#20
CYP2D
closed
2 years ago
1
troubleshooting "no call" outputs for samples with coverage above 30X
#19
mgonzalezporta
closed
2 years ago
4
underscores in diplotype calls
#18
mgonzalezporta
closed
2 years ago
4
Minor bug in target variants for GRch37
#17
benz888-tech
closed
2 years ago
2
Calling on Cyrius test data
#16
benediktusrayo-nala
closed
2 years ago
1
Conda package?
#15
kokyriakidis
opened
2 years ago
2
Alternate and Reference Read Count Output Format
#14
benediktusrayo-nala
closed
2 years ago
1
interpreting d67_snp_* fields in json output
#13
mgonzalezporta
closed
2 years ago
2
Sample specific error
#12
holtjma
closed
3 years ago
7
UnicodeDecodeError
#11
yafengwen
closed
3 years ago
2
support non-standard index names
#10
cariaso
closed
3 years ago
1
Alignment to PGx regions only
#9
kokyriakidis
closed
2 years ago
5
Minor update
#8
xiao-chen-xc
closed
3 years ago
0
RuntimeWarning: divide by zero encountered in true_divide
#7
PavitaKae
closed
3 years ago
4
support remote URIs
#6
cariaso
closed
3 years ago
5
Is there a way to use just a part of cram/bam file to get not-None Cyrius result?
#5
muzic194
closed
2 years ago
2
"None" genotypes with GATK4 best practices BAM/CRAMs
#4
mgonzalezporta
closed
3 years ago
11
Updated Cyrius to call all star alleles (up to *139)
#3
xiao-chen-xc
closed
3 years ago
0
Calling on HG00463 results in s/w crash.
#2
iamh2o
opened
3 years ago
1
Recommended upstream alignment
#1
holtjma
closed
4 years ago
3