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For this query:
```
{
"message": {
"query_graph": {
"nodes": {
"a": {
"categories": [
"biolink:Gene"
…
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Is it possible to work with a different genome species? Can I incorporate an alternative annotation file for plotting?
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Currently frustrated when count matrix only has ENSG id, be it from ensemble or gencode
Is it possible for automation of ENSG conversion to HGNC symbol
Currently using biomart to identi…
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Hi Jessica and Arthur,
In GlyGen we have protein and glycan data for medically important virus species like SARS-CoV, and HCV. We are planning to submit the data for these species however the protein…
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Not sure if already known... I did not see a similar issue so I just write it up for the next release ;)
- Affymetrix - log in required - is that intended, shall we keep that?
- Agilent, Illumina …
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Hello,
I am trying to create a cloupe file from seurat using the create_loupe_from_seurat function. I am importing feature ids using read_feature_ids_from_tsv. However, for some genes I do not hav…
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Hi,
I've built a program which depends upon biomaRt::getSequence() and it appears to return several different sequences when the same query is run for one gene. I am retrieving the exon and intron …
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Ioannis Vlachos mentioned that we should include recommendation within the manuscript on the use of other annotation sets.
Specifically, recommend that when using a different gene annotation set (…
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Hi,
We were testing ccAF on a small example dataset. Because the system is preinstalled with tensorflow 2.x we changed the actinn.py code into:
import tensorflow.compat.v1 as tf
tf.disable_v2_b…
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It seems there are currently two issues complicating the retrieval of patent data for targets, when starting with a ConceptWiki Target.
One is the missing conversion of HGNC names (Data source H, htt…