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There appear to be more command line options in the s/w than you document in the repo. Could you please elaborate on whaat these extra flags do?
~/wgs_resources/bin/TIDDIT.simg TIDDIT.py --sv
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Hi ~
Thanks for developing this handy program.
I am working on a haploid fungus and wondering if I can use this program as well.
I have 12 samples and generate these two files at last. It seems l…
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What's the expected memory usage per genome for Dashing2? I'm trying to run it on 500,000 viral isolates, and am running out of memory even with 500GB
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Despite having a number of events (**DEL**, **BND**, **DUP**, **INS**) spread out across all chromosome in _C. elegans_ (**I**, **II**, **III**, **IV**, **V**, **X**, **MtDNA**) I only see illustratio…
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Hi,
I tried using `--genome` in PLINK to calculate IBD based on a selection of SNPs (in my case 44). Turns out, that in my data:
- 7 SNPs have haploid genotypes
- when merging GWAS data of the sa…
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Thank you for developing such a useful program. This is my first time running RepeatModeler and I'm still working out how to use it to the fullest extent. I'm really glad that you have the "-recoverDi…
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**Describe the issue**
I'm experiencing issues when running the LTR clustering step of repeat modeller.
**Reproduction steps**
Here is the relevant fragment of the job script.
```
db=$1
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Hi,
I am processing a PromethION run with 191mil reads. The first pass of the pipeline processes close to 160mil reads (not a big drop). However, the second pass processes only 4mil reads. I am not s…
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> Beyond sample curation and basic pathologic characterization, the digitized H&E-stained images of TCGA samples remain underutilized. To highlight this resource, we present mappings of tumor-infiltra…
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- [ ] Read the papers
- [ ] Send an email to the writers of the paper
- [ ] search in google scholar more papers on the subject.