-
Popmeta does not seem to be generating 2-locus haplotype results files after [Emhaplofreq] has generated data.
I am using stripped down version of the WS_BDCtrl_Test_EM.ini file (WS_BDCtrl_Test_EM…
-
**System: MacOS 13.6.3**
**Canu version: canu 2.2**
**Input command：**
```
canu -d ecoli-gen3 -p ecoli-gen3 genomeSize=5m -pacbio E_coli_K12_PACBIO/ecoli_p6_25x.filtered.fastq
```
The fastq …
-
Hi,
Thanks for your work on this program. The method seems really elegant and we've had some really exciting results from it so far.
Here is a brief outline of our preliminary analysis:
- We…
-
Hi,
I assembled a diploid fish genome using ccs and ont data via verkko. `assembly.fasta` is twice the size of the target. I still have hic data.
I read "Using Hi-C reads"#62 and "Using phasing blo…
-
My variants called from Nanopore sequencing were phased into a couple thousand blocks. Should I run `nanomethphase.py phase` and then `nanomethphase.py dma` for each of the blocks individually?
-
Hi HapCUT2 team,
First of all thank you very much for providing this beautiful tool for the community. My name is Yutang and I am a doctoral student studying complex plant genomes at ETH Zurich, Sw…
-
Hello developers,
I've generated verkko assemblies for a diploid fungus using nanopore duplex as --hifi and ultralong simplex as --nano.
I want to integrate Hi-C data, so I generated haplotype-ph…
-
Dear authors, i refer to issue #135. I have tried to perform the assembly with verrko using a 50x PacBi HiFI
sequencing data (> 10kb) and all the ONT reads I got (39x covergae)
as you suggest…
-
Hi , I am having an issue running this barcode, it does not have alot of reads, so it could be that no contigs will be assembled, but I just wanted to double check with you. I am doing metagenomic vir…
-
Hello,
I am trying to compile Nanopolish on Apple silicon. I use the following commands:
```
git clone --recursive https://github.com/jts/nanopolish.git
cd nanopolish
make
```
For both x8…