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Some approaches in medical genomics use the blanks to subtract the data sequenced there from the actual samples to remove background noise. Something we should also consider and could easily add (at l…
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Hello everyone,
I have download microbial, archaea, parasitic worm and fungi genomes and then, to build the DB, I used the folllowing command
`./krakenuniq-build --db ../reference/ --kmer-len 31 -…
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Hi all,
I'm trying to run Canu (v2.2) on some old raw CLR reads. I am running the jobs on a linux server with SLURM. I created an interactive SLURM session and then submitted my Canu line:
```
…
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## Description
Hi,
I'm a long-term fan of the SPAdes suite.
In a study where matching metagenomes and metatranscriptomes are sequenced from microbial communities, and high quality MAGs are alre…
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What happened to the parents of Heleopera, Hyalosphenia, and the arcellinida in general? They are disconnected from the rest of the tree.
How can we help sort this out?
#
| Metadata | Do not edit …
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I am trying to use the built files with dadasnake and they do not comply (maybe just their names?)
then trying to reproduce the protocol and it fails:
```
# typo
gunzip SILVA_138.1_SSURef_NR99_0…
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Hi,
When i opened the "global build and install guide” ,it showed “404 - page not found”.
How to install taxator-tk and how to use it?
Thanks
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Hello, I have run into an interesting issue. I first ran my data with the refseq database and got good results, but we wanted to see if our metagenomes included any eukaryotes. So I am running it agai…
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Hello,
OrthoSNAP is a great tool - thanks for developing it!
I have a general question. Is there a way for orthoSNAP to output the removed in-paralogs and their corresponding orthologs? For my d…
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**Note** that the “memo” for this, final week is motivated by the following prompt:
**Imagine 2051.** Use the materials and medium (or media) of your choice to create one modest object that belongs…